Labeo rohita (rohu): 127168712
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Entry
127168712 CDS
T09007
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127168712 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127168712 (sox17)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127168712 (sox17)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sox17_18_mid
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
127168712
NCBI-ProteinID:
XP_050971712
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Position
7:complement(11803937..11807007)
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AA seq
433 aa
AA seq
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MSSPDAGYASDDPSQTRGTSSVLMSGMRQCAWVDPLSPLSDTKVKQETRSSVGPGRGKSE
SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPIVDKRPFVEEAERLR
VKHMQDHPNYKYRPRRRKQVKRNKRLDSSFVLPGVGDAQTPLGMEGLSVGYSELSQARLP
PYCENQTLFESYSLPTPDPSPMDAETTEFFSLQDNHHQPAYSYHNHQEHHFQENTNILTN
MHGHSNMKSLTNTHFHSITHCSVNTHTNPNSHTSSNTPLNLMNNAHPQQLLNESTKQQTS
HSSGTHLNSLPHPISHTIFNRSSSSHQAMPPDYLNCPSTLDDHYSSNSQMKHLYEELSLP
VARHTYKHNITEPHSQAPAAAQNQGSSEMVDEVAFEQCLSYGVPHVPLQGSNLISTVLSD
ATTAVYYCGYSNS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagtgacgacccgagccagacccgaggcaccagt
tcagttttgatgtcgggcatgaggcagtgcgcgtgggtggacccgctcagtccgctttct
gacactaaagtaaaacaggagacgcgttcttcagtgggtcccgggcgcggaaagagcgag
tcgcgcatccgcaggccgatgaacgcatttatggtgtgggcgaaagatgagcgcaagagg
cttgcgcagcaaaaccctgatctgcacaatgcagagctcagtaaaatgcttggtaagtca
tggaaagctttaccaatagtggacaaacgtccatttgttgaagaggcagaacgtctccga
gtgaaacatatgcaagaccacccaaactacaaatatcggccacggcgtcgtaaacaggtg
aaacgaaataaacgactggactccagctttgtgcttcctggggtgggggatgctcagacc
cctctgggcatggagggcttaagtgttggatattcagaactgtcccaagctaggctgcct
ccatactgcgagaaccagactttgtttgagtcctacagcttgcctacacccgacccctct
cctatggacgctgagacaactgagtttttttcccttcaggacaatcaccatcagccagca
tacagctaccataaccaccaagagcaccactttcaggaaaacacaaacattctcaccaac
atgcatggtcatagcaacatgaaatcactgacaaacacacattttcacagcattactcac
tgcagtgtcaacacacatacaaatccgaactcacacacttccagcaatacaccgctcaat
ctaatgaacaatgcacacccacagcaacttcttaatgagagtaccaaacaacaaaccagt
cacagttctggtactcatcttaattccctcccccacccaatatctcacaccatctttaac
agaagctcttcttctcatcaagccatgcctcctgattacctgaactgtccttcaactttg
gatgaccattatagttccaactcccagatgaagcatctatacgaggagctgtcacttcct
gttgcccgtcacacgtataagcacaacattactgagccacactcacaggcccctgcagca
gcccagaatcaaggttctagtgaaatggtggatgaggtggcttttgagcaatgtctctct
tatggggtcccccatgtacctttgcagggttccaacctaatctcaactgtactgtctgat
gctaccactgctgtgtactactgtggctatagcaattcctga
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