Labeo rohita (rohu): 127168880
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Entry
127168880 CDS
T09007
Symbol
col4a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127168880 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127168880 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127168880 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127168880 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127168880 (col4a6)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127168880 (col4a6)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127168880 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127168880
NCBI-ProteinID:
XP_050971959
LinkDB
All DBs
Position
7:complement(17074069..17169147)
Genome browser
AA seq
1687 aa
AA seq
DB search
MKFWSVVLPVVLYAVSARGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGEPGQMGSSGPE
GVPGVPGPVGPKGEKGHVGRKGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPSGPPGLD
GCNGTRGDPGDRARDGFPGLLGRPGFPGQKGQKGEPYYVDVFDQNFIIEGPPGPPGFPGS
VGIPGPEGPSGPDGFPGVPGPPGPPGPPGSPGQGYKGEPGEKGDVGLPGLRGSPAVQFNA
PAISTINKGEKGDKGYDGSPGFPGRQGPPSPFSYKGETGEKGILGLPGLRGPPGLNGPPG
LPGIKGFPGIQGFPGQPGFYGPRGERGEPGPPGPIVEPVGGIKGPSGDPGFPGYPGIVGD
TGFPGLPGQPGPPGVPSSLTGRPGTPGFPGSRGLKGPRGSPGRDSYGPEGLSGSQGLPGL
PGLPGPPGSSPNLFLAGLPGLPGQPGPKGPPGNRGFKGFKGENGDCDCLGGGTIGGQGPQ
GLPGSPGFAGLNGVKGETGDVGFPGPRGPQGFDGRKGDRGFRGRKGEKGHSFFPEGRGQK
GDMGQQGLPGPLGESGKPGRDGSPGLPGQPGLPGEPGFGVTGDKGFPGVPGFKGRPGDRG
EPGIGYPGVAGIKGSQGDPGFNGLPGTPGLPGSKGDSCGQAGLNDASLEEGGSPLPCRIP
GEPGDPGYPGNPGVPGLKGQPGSPGVSGRPGFDGPKGERGDPGSGGQPGPQGFTGPRGDP
GLPGATNAGLPGPPGRGGFPGLSGAKGEPGVVLGATPGRQGSPGRPGEPGDKGQPGVPGL
PGRPGNDGRSGFPGVKGERGVDGSPGPRGPVGPPGEIPPRDPGPRGPTGPKGFNGPPGFP
GLKGMRGDPGPPGRRGLKGIPGLPGIPGSEGFMGPPGPPGIGTRPGIPGRPGIKGEKGSF
GLLGFPGLPGSAGDPGGPGVKGLPGFAGQDGLPGGTGSRGTKGERGAPGLPGPSLPVLPV
EELERGNKGEPGGGGLPGFPGPRGNKGFPGRPGRDGFPGSPGIADQAKGFPGQPGLPGIP
GSFGLPGPKGSPGVLGFPGSPGPRGDDGVPGIQGFPGGLGQPGSKGEKGDSYELSGPPGP
KGTIGNPGFPGGSGVPGAPGDPGFPGVSGFQGQKGFPGEPGAPGFGGPPGLPGNRGLPGY
PGQRGRDGDLGRPGTPGSPGEKGFPGSPGLVGLNGLPGSKGQSGVPGVTEGGRTGAPGVN
GLKGERGSSQPGVPGRSGEKGSRGDTGAPGFSGFPGNRGPPGPPSFSNIPGLPGDPGLPG
LDGREGPFGPPGLPGPPGPGTVQGDRGDAGFPGRPGIPGPRGDPGGFGSPGFEGSPGFKG
QRGDPGFSGIPGPPGFPGEPGDYGRNGPKGLKGIPGRKGPPGIVVPHNITGTRPFGEPGP
AGLDGSVGQAGMPGLPGSPGFPGPKGLRGSVGRLGPVGAAGSPGTFGDPGPSGIQGPTGT
QGARGPPGMRGLPGPPARSTGIGYTLVKHSQSTQVPMCPQGMAKLWEGYSLLYVEGQEKA
HNQDLGLPGSCLPHFSTIPFLYCTVDEICRYASRNDKSYWLSTTAPIPMMPVADQQIAQY
ISRCSVCEAPSHAIAIHSQDLSIPTCPQGWRSLWIGYSFLMHTAAGGEGGGQSLVSPGSC
LEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQNEQFIQGPARETLKGNEYRSRISRC
QVCMKIL
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttggagtgttgtgttacctgttgtcttgtatgcggtgtctgcacgaggggga
tcaaagctgcaggagccgtgtgcaggtcgggactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaaccaggggaacctggacagatgggcagcagtggtcctgag
ggtgtccctggggtcccagggccagttggacccaaaggagaaaagggccatgtaggacgc
aaagggccctctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctgggcaggaggggcccagtggacctcctggtttggat
ggctgtaatggtacacgaggtgacccaggtgacagagcccgtgatgggtttcctggtctt
ctcggtcgtcctggattccctggtcaaaaaggtcaaaaaggagaaccatattatgtagat
gtttttgatcaaaattttataatcgaaggccctccaggtccaccaggatttccaggttca
gtaggaattccaggtccagaggggcccagtggtccagatggatttcctggggtgcctggt
ccacctggtcctcctggacctccaggaagtccaggtcaaggatacaaaggagagccagga
gaaaagggggatgttggtctaccaggactcaggggcagtccggccgttcagtttaacgca
ccagcaataagcactatcaacaaaggagagaagggtgataaaggctatgacggttctcca
ggttttccagggagacagggaccaccaagcccattcagttataaaggtgagactggagaa
aagggaatcctgggcttgccaggcttaaggggtccacctggtctgaacggtcctcctggg
cttcctgggataaaaggcttccctgggattcagggttttccaggacaaccaggtttttat
gggccaaggggtgagagaggagagccaggtccacctggaccgattgtggaaccagtaggt
ggaattaaaggtccttcaggtgatcctggctttcctggttatccagggatagttggagat
acaggttttcctgggcttcccggtcagcctggtcctcctggagtgccttcttctctcaca
ggtcgtccaggcactcctgggtttcccggtagtcgtggactcaaaggaccgaggggaagc
ccaggtcgggactcttatggtcctgaaggtctttctggaagtcaagggcttcctggactt
ccaggtctccctggaccaccgggcagttcacccaacctgttccttgctggactgcctggt
cttccaggccagcctgggccgaaaggacctcctggaaacagaggctttaaagggtttaaa
ggagaaaatggtgactgcgactgtttaggtggaggaacaattggtggacagggacctcaa
gggcttccagggtccccaggttttgcaggactcaatggcgtgaagggagaaactggtgac
gtaggcttcccaggaccccgtggtccacaaggctttgatggtcgaaaaggtgacagaggc
tttagagggcgtaaaggagaaaaaggtcattctttcttcccggaaggcagaggacaaaaa
ggtgatatgggtcaacagggtcttcctggaccacttggagaaagtggcaagcccggaagg
gacggatcccctggcctccctggacaaccaggtctacctggggagcctggttttggggtg
actggagataaaggttttcctggtgttccagggttcaaaggtcgtcctggtgacaggggc
gaacctggtattggctatcctggtgtagctgggatcaaaggttcacaaggtgatcctgga
ttcaatggtcttcctggaacacctggacttcctggttctaaaggtgacagctgtgggcag
gcggggcttaatgatgcctctttggaagagggaggatcaccactgccctgtaggattcct
ggtgaacctggagatccaggataccctggaaatcctggagtgccagggctaaagggtcag
cctggttccccaggagtgagtgggcgcccagggtttgatgggccaaagggtgagagagga
gatccaggctctggaggtcagccaggacctcaaggttttaccggacccagaggagatcca
ggtttaccaggagcaacaaatgctggcttgccagggcctccaggaagaggtggttttcca
ggtttgtcaggagctaagggagaaccaggtgtggtgcttggggccacccctggacgtcaa
ggttctccagggagaccaggagagccaggagacaagggtcaacctggtgtacctggttta
ccagggaggcctggtaatgatggacgcagtggatttcctggtgtaaagggagaacgaggt
gtagatggaagtcctggtcccagaggtcctgtaggtccaccaggagaaatccctcccagg
gatcctggtcccagagggccaactggacctaaaggatttaatggacctccaggtttccca
ggcctgaagggtatgagaggagatccagggcctccagggcgtcgtggactaaagggtata
ccaggacttcctggcatcccagggtcagagggatttatgggacctcctggacctcccggc
attggaacacgtccaggcatacctggaagaccaggaataaagggggagaaggggtctttt
ggattgttggggttcccaggattacctggttctgctggagacccaggtggtccaggagtt
aaaggtttacctggtttcgctgggcaggatggcttacctgggggaactggatcaagagga
accaaaggggagcgtggtgctcctggtcttccaggaccctctcttccagtgcttccagta
gaggagctggaaaggggtaataaaggtgaaccaggaggtggcggactgcctggtttccca
ggaccaagaggtaacaagggttttcctggtagacctggacgtgatggctttcctggatca
cctggtattgcagaccaagcaaaaggttttcctggccagcctggactcccaggtattcct
ggctcctttggcttgcctggtcctaaaggttcacctggagttctgggcttccctggctca
ccaggcccgaggggtgatgatggtgtacctgggattcaagggttcccaggtggtctagga
caacctggtagcaaaggtgagaaaggtgattcatatgaattatctggaccccctggacca
aagggtacgattggaaatcctggattcccaggtggttcaggagttcctggtgcaccaggt
gatccaggtttcccaggagtctcgggatttcaaggccagaaaggttttcctggagagcca
ggagcacctggatttggtggcccaccaggcctcccaggaaataggggtctccctggttat
cccggacagaggggccgtgacggagatttgggtcgtcctggaactccaggttcaccagga
gagaaaggttttccaggatcacctggtttagttgggctcaatggtcttccaggatccaag
gggcagtctggagttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaat
ggcctgaagggagagagaggctcatcacagcccggagtacctgggcgttctggagaaaaa
ggatctagaggagacactggtgcccctggtttttcaggcttccctggtaatcgaggcccc
cctggcccacctagtttttctaatatcccaggtcttcccggagaccctggacttccagga
ttagatggacgagaaggtccctttggccctcctggcctacctggtccaccaggccctgga
acagtccaaggagaccggggagatgccggatttcctgggcgaccaggaataccaggtcca
cgtggagaccccggtggttttggaagccctggatttgaaggcagccctggttttaaagga
caaagaggtgaccctggctttagtggtatacctggtccaccagggttccctggagaacca
ggagattatggcaggaatggacccaaaggattaaagggtattcccggtcgtaagggacct
ccaggtattgtggtcccacataacataaccggcactaggccatttggggaaccaggccca
gcaggtcttgatggatctgttggtcaggcaggaatgccaggcctgccaggcagtccagga
ttcccaggtcccaaaggtctccgagggtcagtgggtagacttggtcctgttggtgcagct
ggatctcctggaacttttggtgaccctggaccttcaggaatccaaggacccaccggaact
caaggagcccgtggcccaccaggaatgcgaggtcttcctggtccacctgcgcgcagtacc
ggtatcggttatactttggtgaaacacagtcagtccacccaggtgcccatgtgtcctcaa
ggcatggccaagctgtgggagggctacagtttgctctatgtggaggggcaggagaaagca
cacaaccaggacctgggattgcccggctcctgcctgccacatttcagcaccatccccttc
ctgtactgcacagtcgatgaaatctgccgctacgctagtcgcaatgacaaatcctattgg
ctgtccaccacagcacccatccccatgatgcccgtggcagatcagcagatagctcagtac
attagccgctgctcagtgtgtgaggctccatctcacgcaatcgctatccatagccaggat
ctcagcataccgacctgccctcagggctggagaagtctgtggattggttactccttccta
atgcacacagccgcaggtggcgaaggaggcggtcagtcattggtgtctcccggttcttgt
ctagaggatttccgcgctacccccttcatcgagtgcaacggtgcccgcggtacctgccac
tactttgccaacaagtacagtttctggttgaccacggtagagcagaatgaacagttcatc
cagggtcctgcccgggagacgctgaagggaaacgagtaccggtcacgcatcagtcgctgt
caagtctgcatgaagatcttgtag
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integrated database retrieval system
