Labeo rohita (rohu): 127168986
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Entry
127168986 CDS
T09007
Name
(RefSeq) RNA exonuclease 5-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127168986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lroh03009
]
127168986
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
RNases
127168986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNase_T
Motif
Other DBs
NCBI-GeneID:
127168986
NCBI-ProteinID:
XP_050972132
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All DBs
Position
1:684583..694311
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AA seq
780 aa
AA seq
DB search
MKSETRSAEGQMDSSSSSSSSCCKRKADRLISDSPEKREKLELSSQDVLTVKDVCDLIHY
ITLRRSHNVRKPSWLGVGVERVSRVNVMVLDGLTQSHFYRYFSHFRHLRNKYSTRWTLAP
SSGDLLTSDLLEGEVAVCDGAAETRAPLPAALMWHPVIRRFNMNADRLSTYLLTEQEMIK
QKFPVKGGQGCEGFVCTRSDGHMMDGSPLFGLDCEMCLTCAGSEVTRVALVDDSGRCVLD
ELIKPPNPIIDYLTKFSGVTREMLAPVSTRLSDVQSKLLQLLPPDAVLVGHSLDGDLRAL
HMIHPHVIDTSVLYRQDSGRRFKLKHLAQVILKREIQSEVRTGHDPCEDALAALHLAQYF
IRKGPRKMLDRRWLMLILCQVVEDHLEDLWDMDLPEEDDCDHVTSSDHCRSPLHFGHTLN
RSGQSAVFLGGSVKTNGSLSNQQCRRHQCSSDREVVCVFRRVVQLYTLSVLQFSSFSRTL
NQTAAMGRHLQQVCERLDQMCVLFVGPLPSDATETLVHRLLKRCGRLRTVRLLHYTHGVH
AEVVFEHLEGAQLALEHLNGHQINDCIIKVRRPVHESCLDLDERLSERQNDPLNAHVIYV
CNLSSKPHRREDQLQTFGQFGPVTHVTSTSEHAGKRGRHAFIKFECADSAQAAVGAAVQN
ANRKLSVCHALTPPHVTSWTHTRPVTTETSPDTAEQGEECDVSDSCQSNRNFALVLLWLF
MSCDPQEPLLERQMKKLDGRVGKVFRALEKNCLSIVILPGHRRNGIHHPGLCFIHVKQRD
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtgaaacaagatcagctgaaggacagatggactcttcttcatcctcctcatcc
tcatgctgtaagaggaaggctgacagactgatctcagattctccagagaaaagagagaaa
ctggagctcagctcacaggatgtgctgacggtgaaggacgtgtgtgatctgatccactac
atcacactcagacgctcacacaacgtgaggaaacccagctggttgggtgtcggcgtggag
cgagtgtcccgtgtgaacgtgatggttctggacggactcacacagagtcacttctacaga
tacttcagtcacttcagacacctgaggaacaaatacagcacgagatggactctggcgccc
tcctctggtgacctgctgacctctgacctcctcgagggtgaggtcgccgtgtgtgacgga
gcagcagagacgcgtgcaccgctgccagctgctctgatgtggcatcccgtgattcgccgc
ttcaatatgaacgccgacaggctgagcacctacctgctgaccgaacaggaaatgatcaaa
cagaagtttcctgtaaagggtgggcagggctgcgaggggttcgtgtgcacgcggagcgac
gggcacatgatggacggcagtcctctgttcggtctggactgtgagatgtgtctgacgtgt
gcggggtcagaggtcacgcgtgtggcgctggtggacgatagtggacgctgtgtgctggac
gagctcatcaaaccacccaaccccatcatcgactacttaaccaagttctcaggggtgacg
cgagagatgctggctcccgtctccacgcgtctgtcagacgttcagtccaaactgctgcag
ctgctgccgccggacgccgtgctggtcggtcactctctggacggagacctgcgcgcttta
cacatgattcatcctcacgtcatcgacacgtctgtgctgtaccggcaggattccggccgc
aggttcaaactcaaacacctggctcaggtcattctgaagcgggagatccagtcagaggtc
aggacaggtcacgacccctgtgaggacgcgctggccgctcttcatctggctcagtacttc
atcaggaagggacccaggaagatgttagatcgtcgatggctgatgttgattctctgtcag
gtggttgaggatcatctggaggatctgtgggatatggaccttcctgaggaggacgattgt
gatcacgtgacctcgtctgatcattgccgcagtcctctccacttcggccacaccctcaac
agatctggccaatcagcagtgttcctgggcggatcggtgaagacgaacggctcgctgtcc
aatcagcagtgccggagacaccagtgctccagtgacagagaggtggtgtgtgtgttcaga
cgggtggttcagttgtacacactcagtgttcttcagttctcatcattcagcagaacactg
aatcaaacagcagcgatgggacgacacctgcagcaggtgtgtgagcgtctggatcagatg
tgtgtgctgtttgtcggcccgctgccgtctgacgccacagagactcttgtacacagactc
ctgaagcgctgcggacgcctgcgcaccgtacgactgctgcactacacacacggggttcat
gcggaggtggtgtttgagcatcttgaaggagctcagctcgctctagaacatctgaatgga
caccagatcaacgactgcatcatcaaggtgcggcgtcccgtacacgagtcgtgtctggat
ctggacgagcgtctctctgagcgtcagaacgatcctctgaacgctcacgtcatctacgtg
tgtaacctgtcctccaaaccgcatcggcgtgaagaccagctccagaccttcggacagttc
ggccccgtcacgcacgtcacaagcacctcagagcatgctgggaaacgcggcagacacgcc
ttcatcaagtttgagtgtgccgacagcgctcaggccgcggtgggcgccgccgtccagaac
gccaacaggaagctgtcggtgtgccacgctctgactccgccccacgtgacctcatggacg
cacacacgccccgttaccacggaaaccagcccagacacagctgagcagggggaggagtgt
gatgtgagtgacagctgtcaatcaaacagaaactttgccttagttcttctctggttattc
atgtcatgtgaccctcaggagccactgctggagcggcagatgaagaaactggacggaaga
gtgggaaaagtgttcagagcgctggagaaaaactgcctgagcatcgtgatcctgcccgga
cacagacgtaatggcatccatcatcccggcctctgcttcattcacgtcaagcagagggac
tga
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