Labeo rohita (rohu): 127169018
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Entry
127169018 CDS
T09007
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127169018 (chd9)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127169018 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
127169018
NCBI-ProteinID:
XP_050972173
LinkDB
All DBs
Position
7:complement(27191473..27270849)
Genome browser
AA seq
2934 aa
AA seq
DB search
MTDPIMDFFDDPSIFGGGLDSLVQDDPGFTPGSVSLDDELHLGPGLEPLQVDAGSRSTIQ
HGIPYNQPVGHFDTMKAQTSMEQSFPGSEGGGNVARAFLPQQQSFQGHTMNQVPQTNGLF
LHSSPMWGNHDQKGNNYHQHNQQIHHQQLQHKQFQQQQQFQQHQQYSQQHQHLQQRQHSL
NQHPISNQLQHPHQQIPHQGLHHIGKTYQEHTGFYYESNVPQNHSQHGHSLGVEGSPFHP
TVEASMMPASSQQHSGFQIAQGVQGFTTGPRLEDNDLAFPVQSSSADHSFPTDSVSHASS
YPTAHYSLPGQHPPTQSYSTAPASMTTSSTAIPSSNLLNTGCPFLSNSGMEHQQQKVRIP
GSPAQQCSLNGSKSDQNPFRSPEVFPDGLNSFAADCPFSTTERGNRDVPGPLVTSHSSNG
FQALEEVLLGEQHGHRLDLGEAPDLLGDELLPQLEALDQEESSNHSWVNSELENDQEDLK
DEDGVEDVPMLYSAQPPKNTNGPSSQQRVLSPPVKSSSSSSSSSSSYISVSEKRVQKRQQ
QQQQQQQQMEALSDDKQQKANRIISEAIAKARERGEKNIPRVMSPDSFPSSSSQHRSHKA
GSSKSRGKDKSSKKARIVTSSKSKQKAQIGKIVIKLGKKKRKKTDSSEELSDDDRPTRRS
SKDDDSKRRSNRKVKRKKYEDDGEARLSDEEMKVIVKAKKSNSSAHKQPAVQLFVENPTE
EDAAVVDKIMASRVVKNEVSPGVIVETEEYYVKYKNYSYLHCEWATEQQLEKDKRIQQKI
KRFKIKQAQKAHFFADMEEEPFNPDYVEVDRVLEVSYCEDKDTREPVVYYLVKWCSLPYE
DSTWELKEDVDQTKIEEFKKLQAAKPNTNRMERPPASHWKKREQSREYCNGNCLRDYQLE
GVNWLLFNWYNRRNCILADEMGLGKTIQSITFLDEIYRTGIKGPFLIIAPLSTIANWERE
FRTWTNLNVIVYHGSVVSRQMLQQYEMYFRDAQGRVIRGAYRFQAVITTFEMILGGCPEL
NAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPS
RFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQ
KKYYRAILEKNFSFLAKGAGQANVPNLLNTMMELRKCCNHPYLIKGAEEKILEDFKEVYS
PTAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE
RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL
QAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSLGGGGQ
MQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFA
KASFVASGNRTDISLDDPNFWDKWAKKAEIDMDTVNGRNSLVIDTPRVRKQTRPFSATKD
ELAELSEGDSSGDDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGRWKDILAHGRFKRQ
LSERDVEWICRALLAYCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQNHLGLSTPVPRGR
KGKKMKTQSSSFDIQKAEWIRKHNPEHMLSDDGYKKHLKHHCNKVLLRVRMLYYLKQEVI
GVQCQKVLDGADAGEIEIWVPEPDHSEMPAMWWDMLSDKCLLLGVFKHGYEKYNTIRADP
ALCFLEKVGRPDEKAIAAEQRGNDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDLVITD
TGGEGGSVLDGGGGTLSIGSGMYWPSPSTLTARLRRLITASQRFTKSRQILQIHQTQQAM
TPALYPLPPTLSDTLNPKIAAKIERQQRWTRREEADFYRVVSTFGVVFDPDLGRFDWTKF
RAMARLHKKTDESLHKYLCAFIAMCRRVCRLPAIEGDMVDSSLAIQPITEERASRTLYRV
ELLRKIREQVLRHPQLYERLALCQPGPDLPVWWETGSHDRDLLLGAAKHGVSRTDYHILR
DPELCFMAAQRNYSQNKGTAAQVQAQNQTPSLGQCHIPTPLQHIQAKEASASPLVNQTEL
KEEPLSEGEEESGEKDVKMETPSIRPPTPSGVDEKDDMHKAGENESRMVAARTKPLTPNS
VTRKQKKLSKRSRREARRGSGSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSS
SCSSGSSSSSSSSSSSSEDSDSEEVPKNASAVPGVKGFDEDSVASLNTTQDDMQDSHVTN
GISNPPHPFQGGYMLAASYWPKDRVMINRLDSICQAVLKGKWPGVRRAYEGNAVTSFYTT
KLLDNTSTLTEDPSASPQGSKVKKHVADREKEFSVKINDQEGSLKLTFQKQGLPLKRPLE
GEEGPLAQQQYLARLQELQNASDTSLADYTKPQNSYPQVLPEQMRLNGVMDGQPVMKKRR
GRRKNVEGMDLLFMNKNRPPLMPEQASAGWSSSVAGTSAAPGLSATQGPSTLDTECRVPV
ISLKDGTRLAGEDAPKRKDLDQWLKEHPGFVADVGAFIPTANKLQFQDGRPKQKRHRCRN
PNKIDINSLTGEERVQIINRRNARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQS
GYLPESMFDRILTGPIVPEEVSRRGRRPKNALAKTTTVASASANAALGLNPLLTNGLLAG
LDLPSLQALQHNLQSLQSLQLTTGLMGLPHDPTNMAAMFPMMLSGMTGLPASLLGMSGIL
GKQEAAGIALMSDEDGKKKSGGESATPKGSAETLSPDGKAERTEGQSFKATTSTAAKSNQ
TSASASGHPLALNPLLLSSMLYPGMLLTPGLNLPVANQPQAANTQPTPPLQPAASEAAAQ
LLGQSEDKDSDEGEEPDEKKDTSGPEGSAKAESSSSESDSSSSSSEDSDSSDED
NT seq
8805 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccatcatggacttctttgatgaccctagcatatttgggggagggcttgac
agcttagtccaggatgatccagggtttacccctggttctgtatccttggatgatgaactt
cacctgggtccaggtttggagcctcttcaggtggacgcaggctccagatctaccatccaa
catgggataccctacaaccaacctgtgggccactttgacactatgaaggcacagacctca
atggaacagtccttccccggttcagaaggaggtggcaatgttgcaagagcatttttgcca
cagcagcaatcatttcaagggcatactatgaaccaagtgccccagaccaatggactgttt
cttcacagcagccccatgtggggaaaccatgatcaaaaagggaataactaccatcagcac
aatcaacaaattcatcatcaacaacttcagcacaaacaatttcagcagcaacagcaattt
cagcaacatcaacagtatagtcagcaacatcaacatcttcagcagagacagcacagcctc
aatcaacacccaatctcaaaccaactgcagcaccctcaccaacaaataccccatcaaggc
ttgcaccatatcggcaagacctatcaggaacacaccggtttttactatgagagcaacgtc
cctcaaaatcattcccagcatggccactcactcggtgtggagggtagtccctttcaccct
acggttgaggcctcaatgatgcctgcatcttctcaacaacacagtggctttcagatagcc
caaggggtccaaggttttactacaggtccaaggttggaggacaatgacctagccttccct
gtccaatcttcctctgcagaccattcttttccaactgactcagttagccatgcttcatcc
tatcctactgctcattattctctgcctggtcagcatcccccaactcagtcttactccact
gccccagcctctatgacaacctcttcaacggccatcccatcttcaaaccttttgaatact
ggttgtcctttcttatctaattctggaatggaacaccagcagcaaaaagtccgaatacca
ggcagtccagcacaacagtgctccttaaatggctccaaatcagaccagaatccctttaga
tctcctgaggtgttcccagatggtctgaactcgttcgccgcagactgtccgttctctacg
acagagcgagggaaccgtgatgtgcctggacctttggttacaagccacagcagtaatggg
tttcaggcactggaggaggtcttgcttggagaacaacatgggcacaggcttgacctgggc
gaagctcctgaccttttaggggatgagctgttgcctcaactggaggcactagaccaggaa
gagagctccaatcactcctgggtaaattcagaactagagaatgaccaagaggatctgaag
gatgaggatggtgtggaggatgtgccaatgctttacagtgcacagcctcctaagaacact
aatggtcccagcagccaacagcgggtactcagcccaccagtgaagagcagctcttcttct
tcctcatcctcatcctcgtacatatctgtgtcagagaagcgggtgcagaagcgacagcaa
cagcaacagcagcaacaacagcagatggaggccctttcggacgataaacaacagaaggcc
aatcgaatcatctcggaggccatcgccaaagcacgagagaggggagagaaaaatattcca
cgcgtcatgagtcccgacagcttcccgtcttcttcgtcgcagcaccgcagtcacaaggcc
ggttcttcaaagtccagaggcaaggataagagctccaagaaggcccggattgtgacgtca
tccaagtctaaacaaaaggctcaaattgggaaaatcgttataaagcttggaaagaagaag
cgaaagaagacagattcctctgaagagctgtctgatgatgacagaccaactcgacgatcc
tctaaagatgatgattcgaagcggcgttcgaatcggaaggtcaagaggaagaagtatgag
gatgacggtgaggctcgattgtctgatgaagaaatgaaggtcatcgtcaaagccaagaag
agcaactccagtgctcacaaacagcctgcagtgcaactgtttgtggagaacccgactgag
gaagatgctgctgttgttgataaaatcatggcatctcgtgtggtgaaaaatgaggtttct
cctggggtgattgtggaaactgaagagtattatgtcaagtacaaaaactactcgtatctt
cactgtgagtgggcgacggagcagcagttagagaaagacaagaggatccagcagaaaatc
aagcgcttcaagatcaaacaggcgcagaaagcacacttctttgctgatatggaggaggaa
ccttttaatcctgactatgtagaagtggacagagttctcgaagtctcatactgtgaggac
aaagacaccagagagccggtggtgtattacctggtgaaatggtgctcattgccatatgag
gacagcacatgggagctgaaggaagatgtagatcagactaagatcgaagagttcaaaaag
ctgcaggcagcaaaaccaaacaccaacagaatggaacgtccaccggcgagtcactggaag
aagcgggagcaatcgcgagagtattgtaatggaaactgtctcagggattaccagctggaa
ggggtcaactggcttctcttcaactggtacaacaggcgcaactgtattctggcggatgag
atgggtctgggaaagaccatccagtccatcacatttctggatgagatctatcgcacaggg
atcaaggggcctttcctcatcatcgcccctctctctaccatcgctaactgggagagagaa
ttcagaacctggacgaacctcaacgtcatcgtgtaccatggcagtgtggtcagcagacag
atgctccagcagtatgaaatgtacttcagagatgctcagggtcgtgtgataagaggtgct
taccggtttcaggcggtcattacaacatttgagatgatattgggaggctgtccagaactt
aacgcaatagactggcgctgtgtcatcattgatgaagcccatcggctcaaaaataagaac
tgcaagctactggagggcttcaaacttatgagtctggaacataaggttttgttgacgggc
actccactacaaaacacggtagaggaactctttagtctgctgcacttcctggagccgagc
cgcttcccttctgaaagcaccttcatgcaggaatttggagacctcaagactgaggagcag
gtccagaaactccaggccatcctaaaaccgatgatgctgcgtcgacttaaagaagacgta
gagaagaagttggcccctaaagaggagaccatcattgaagtggagctcaccaacatccag
aagaaatactaccgcgctatattggagaagaacttctcattcctggctaaaggagctggc
caagccaatgtcccaaacctgctcaacaccatgatggaactgcggaaatgctgcaaccat
ccctacctcatcaaaggggctgaggagaagatcttagaggacttcaaagaggtgtacagc
cccacagcagtagatttccacctgcaggctatgattcagtcagcaggtaaactcgttctc
attgacaagctgctccccaagatgaaggccggtggacacaaagtgctcatcttttctcag
atggtgcgctgcttggacatcctggaagactacctcatccagagaagatacctctatgag
cggatagacggccgtgtacgtgggaacctccgtcaggcagcaatagaccgtttcagtaaa
ccagactccgatcgattcgtcttcctgctgtgtactcgagcgggtgggctcggtattaac
ctcacagctgctgacacctgcatcatctttgactctgactggaaccctcagaacgacctg
caggctcaggctcgctgccacaggattggtcagaataaagcagttaaagtatatcgacta
atcactcgtaactcatacgagcgagagatgttcgatagagccagtctgaagctgggtttg
gataaagccgtgcttcaaagcatgagtggacgagaaaacagtctaggaggaggagggcag
atgcagcagcagctctctaagaaggagattgaggaccttctgaggcgtggagcttatggt
gccatcatggacgaggaagatgagggggctaaattttgtgaagaggacattgaccaaatc
ctgcaacgcagaaccaagaccatcactattgaatctgagggtcggggctccacctttgcc
aaggccagttttgtagcttcagggaacagaacagacatctctctggatgaccctaacttc
tgggataagtgggccaagaaagcagaaattgacatggatacagtcaatggcagaaacagt
ctggtgattgacacccctcgtgtcaggaaacagacccggccgttcagcgctaccaaggac
gagctggccgagctctctgaaggggatagtagtggagatgacaaacccaaactccgccgg
ccgcatgaccgcctcaacagctatggccgcacagagtgcttccgggtggagaaaaatctg
ttggtgtacgggtggggccgctggaaggatatcctggctcacgggcgctttaagcgtcag
ctgagtgagcgtgatgtggagtggatatgcagagcgctcttggcttactgcctcgttcat
taccgaggagatgataaaatcaagagtttcatgtgggatctgatcgctcccactgaggac
ggcaggaccaaggaacttcagaaccacttgggtttgtcgactccagtgccacgaggcagg
aaaggaaagaagatgaagactcagtctagctcatttgatatccagaaagcagagtggatc
cgaaaacacaacccagaacacatgttgtctgatgatgggtacaagaaacacctgaaacac
cactgcaacaaggtgctgctgagggtcagaatgctgtactatctgaaacaagaggtgatc
ggagtacagtgccaaaaagtgctggatggggcagatgccggtgagatagagatctgggtt
cctgagccggatcattcagagatgcctgctatgtggtgggacatgctctcggacaaatgt
ctgctgttaggagtctttaagcacggttatgagaagtacaacactattcgggcagatcca
gcactgtgtttcttagaaaaggttgggcggccggacgagaaggccatcgctgctgaacag
agaggaaatgactttatggatggagatgtggacgacccagagtataagcctgctccagct
ttgctgaaggatgatatggaggatgatgcttcttccccaggagacctggtcatcactgat
acaggcggagaaggagggtctgtattagatggtggcggtgggactctgagcattggctca
ggaatgtactggccctcgccctccacgctgacggcccgactgcggcgtctgatcactgca
tctcagcgcttcaccaagagcagacagatacttcagatccaccagacacagcaggccatg
acccctgccctctaccctctgcctcccacactcagcgacacactcaatcccaaaattgct
gctaagattgaaagacaacaacggtggacacggagagaggaggcggatttctaccgcgtg
gtttcaacatttggggtagtgtttgatccagatttgggccgtttcgactggacaaagttc
agagccatggctcgactgcacaagaaaactgatgagagtctacacaagtacctgtgtgcc
tttattgccatgtgcaggagggtctgccgcctacctgctatagagggagatatggtggac
tcctctcttgctatacagccaatcacagaggagcgtgcctctcgtaccttatacagagtg
gagttgctgcggaagataagagagcaggtgttgcgtcacccgcaactttatgagcgtctc
gcactgtgccagccaggaccggatcttccagtgtggtgggaaacaggatcccacgatcgg
gatcttctacttggagcggccaaacacggagtcagtcgaacagactaccatatcctccgt
gacccggagctctgctttatggcggcacagaggaactacagccagaacaagggaactgca
gcacaagtccaagcccagaatcagaccccttcactgggacagtgtcacatcccgaccccc
ctccagcacattcaggctaaagaggcttctgcttctccactcgtaaaccaaactgaacta
aaggaggagccgctgtcagagggagaggaagagagtggagagaaagatgtcaagatggag
acgccctctatcagaccacccacaccttcaggagtggatgagaaagatgacatgcacaaa
gccggagagaatgagagccggatggtggcggccagaacaaaaccgctcacgccgaactca
gtcactcgaaaacagaagaagctgagtaagcggagccgcagagaggccaggagggggtcg
ggatcagactcggactcggatggctcctcgtccagctcttcgtcgagttcttcatcaagg
tcttcttcctcgtcctcgtcttcgtcacggtccggatccagttcctcgtcttcgtcttcc
tcctgttcttcaggctcctcgtcttcatcatcgtcgtcatcctcgtcttcagaagacagt
gacagtgaggaggtaccaaagaacgcgtcagcagtacccggtgttaaagggtttgacgaa
gacagcgttgcctcactcaacactacacaagatgacatgcaggacagtcatgtgaccaac
ggtatctctaaccctccccaccctttccagggaggctatatgcttgctgcctcctactgg
ccaaaggaccgtgtcatgataaaccggttggacagtatatgtcaggcagtgttgaagggg
aaatggccaggggttcgtcgtgcatacgaaggcaatgcggtgacttctttttacaccact
aaactcctggacaacacatccacgctcacagaagacccttcagcttcccctcagggttca
aaggtgaagaagcatgttgcagacagagaaaaggagttctcagtcaaaatcaatgaccag
gagggcagccttaaactgaccttccagaagcaaggtttgcctctgaaacgccccctggag
ggtgaggagggacctcttgcccagcagcagtacttagcccggctacaagagttgcagaat
gcgtctgataccagcctcgcagactacaccaaaccacagaacagctacccacaagtactg
ccagagcaaatgcgtctgaatggagttatggacggacagcccgtaatgaagaagaggaga
ggacggcggaagaatgtggaggggatggacctgctgttcatgaacaaaaacaggcctcct
ctgatgccagagcaggcttctgctggctggagtagcagtgttgccggtacatccgctgca
cctgggttgagcgcaactcaggggcccagcacccttgatacggaatgccgagttccagtc
atcagcctcaaagatgggacacgactagctggagaggatgctccaaaacggaaggatttg
gaccagtggctaaaggagcatccaggcttcgtggcagatgtgggagcttttattcctact
gcaaacaaattgcagtttcaagatggcagaccaaaacagaagagacatcgctgcagaaac
cccaacaaaattgacatcaacagcctgactggagaagaaagagtacagatcattaacagg
cgaaatgctcgcaagattggtggtgcatttgctcctcctctgaaagatttaagccggttc
ctgcaggagaatccagagtatggagtcccaccagagtgggctgatgttgttaaacagtct
ggttaccttcctgaaagtatgttcgaccgcattctgaccggccccatcgttcccgaagag
gtgagccgacgaggtcgacgtcccaaaaacgctttagctaaaacaaccacggtggccagt
gccagtgccaacgccgccctggggctcaacccactcctaaccaacggcctcctcgccggg
ctggacctgcctagtcttcaagctcttcagcacaacctccagagcctccaatctctccaa
ctcaccaccggcctcatgggactgcctcacgaccccaccaacatggccgccatgtttccg
atgatgctctccggaatgaccggccttccggcatccctcctcgggatgagcggtatcctc
ggaaaacaagaagcggcgggtatcgctttgatgagtgacgaggacgggaaaaagaagagc
ggtggagaatccgccacacccaaggggtcggccgagactttgagtccggatggcaaagcg
gaaaggacagagggtcaaagtttcaaagctaccacctcgacggcagccaagtcgaatcaa
acaagtgcttctgcttcaggccacccactggccctcaacccccttctactctctagtatg
ctctacccagggatgcttcttactccaggccttaacctgcctgtggccaaccagccgcaa
gctgcaaacactcagccaaccccaccgctgcaacctgctgcctccgaagccgcggcccag
ctgctcggccaatcggaggacaaagacagcgatgagggggaggagccagacgaaaagaag
gataccagtggtccagagggctcggcgaaggcggagtcgtcctcctccgagtccgacagc
tcctcctcgtcatccgaggattccgattccagcgacgaagactga
DBGET
integrated database retrieval system
