Labeo rohita (rohu): 127169110
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Entry
127169110 CDS
T09007
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127169110 (ddx20)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127169110 (ddx20)
Spliceosome [BR:
lroh03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
127169110 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
AAA
AAA_19
NOA36
Motif
Other DBs
NCBI-GeneID:
127169110
NCBI-ProteinID:
XP_050972206
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All DBs
Position
8:17703065..17711912
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AA seq
781 aa
AA seq
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MAAPMKAAHELQSRTRTDDVLINGGVEFSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLG
RCGLDLIVQAKSGTGKTCVFTTIALDSLILENTTTQVLVLAPTREIAVQIHAVVMAIGSA
MEGLECHVFIGGRPISQDKLHLKKCHIAIGSPGRIKQLIEMGALSTSSIRLFVLDEADKL
LEDDSSSSFQEQINWIFSSLPANKQMLALSATYPESLAQHLSRYMREPTFVRLNPTDPGL
LGLKQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKG
LPAVCISGGLSQDQRLEAMWKLRQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETY
MHRIGRAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLNLTHLPDPIPPGIMEEACDWDV
IIEPPSKPKQKMSDVPKPEKKKQAKSEKPTLKPSREPHISTVIPEKPTRDKSYSGAETKV
KNHSPKPGRQKPLQSANLQHDSTPTQKEQNDTLPRIPPLSSFKSHVRKVMTFSEALADYE
NFITEGPGRSVEIIRQYGFSRSRDAVNGLHNSHDDDDDDDDDDDNDGGGDDDNDKAYKSY
VLEESHYHQDLPPPKEVSELSSEQKTLSMSSDGGSSESEMEVESESSSSVPNRSSHHTPA
LPNNIVSELNESSLPSARVSQQTYRNKQRPSEPQSQNPAKPHSLSQKHRPASKSSRKAAS
AGQKSRKREPDQLEEEVAGEDYWTSYRAWVEYYNSYYHHSPYNWMTAYYMNSVYIKEMMK
H
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacccatgaaagcagcgcatgagctgcaatccagaacccggacagatgatgtt
ctgattaacgggggtgtcgagttcagctctttactcctgtcaaaacctgtgcttgagggt
ttatctgcctctggctttcagagaccgtctcccatccagctgaaggcaatcccgctggga
agatgtggactcgatcttattgttcaagccaagtctggcacaggaaagacttgtgtgttc
accaccatcgctttggactctcttatattggaaaacacaaccacccaggtgctggttttg
gcccctactcgggagattgcggtgcagattcatgctgttgtcatggctataggcagcgct
atggagggtttggagtgtcatgtgttcatcggcggccgacccatcagtcaagacaaactt
catctgaagaaatgccacattgccattggttcaccaggtcgtattaagcagctaattgag
atgggagccctgagtacgtcctccattcgcttgtttgttttggatgaggctgataagctg
ctggaagacgacagcagcagcagttttcaggagcagatcaactggatcttctcctcttta
ccagcaaacaaacaaatgttggcgctttccgccacctacccagaatctttagctcagcat
ctgtcaagatacatgagagagccgacgtttgtgcgactgaacccaacagaccctggactc
cttgggctgaagcagtactataaaattgtgccgtctcattcattacctcataaagtcttt
gaggagaaggtgcagagtctccttgaactcttcagcaaaatcccatttaaccaagcgctg
gtattctcaaacctccatacaagagctcaacatttggctgatatcctctcctctaaaggt
ttgcctgcggtctgcatctcaggtggtttaagccaggatcagaggttagaggcgatgtgg
aagctgagacaatatcagtgtcgagttttaatatccactgatctgacctcacgtggtatt
gatgctgagaaggtgaacttggtgattaatcttgatgttcctcaggactgggagacctac
atgcaccgtattggtcgtgctggacgatttggcactctaggggttgctgtgacctactgt
tgccatggagaggaggagaacaagatgatggccattgctcagaaatgctctctgaatctc
actcatttaccagatccaatccctccagggatcatggaagaggcttgtgactgggacgtg
atcattgaacctccttcaaaacccaaacagaaaatgtctgacgttcccaaaccggagaag
aaaaaacaagctaaatctgaaaagccgacattgaaaccttccagagagcctcacatctca
acagtcatcccagaaaagccaacacgtgataaatcctacagtggagctgaaaccaaggtt
aaaaatcactcacccaaacctgggaggcaaaaaccattacagtctgcaaacctccagcat
gactcaactccaactcagaaagaacagaatgacacccttcccagaattcctccactatcg
tcttttaagtcgcatgtacgaaaagttatgactttcagtgaggctttggcagattatgag
aatttcataacagaaggtcctggaagatctgtcgaaataattcgccagtatggtttcagt
aggagtcgagatgcagttaatggactgcataacagccatgatgatgatgatgatgatgat
gatgatgatgataatgatggtggtggtgatgatgataatgataaggcttataaatcatat
gttctagaagaatcacactaccatcaagatcttcctccaccaaaggaggtttcagagtta
tcctctgaacagaagacactttccatgtcatctgatggtggttcttcagagtctgaaatg
gaggtagagagtgaatcaagctcttctgtccccaatcggtcttcacatcacacacctgct
cttccaaacaatatagtctcagaattgaatgaatcctctttaccttcagccagagtatca
caacagacctacagaaacaagcaaaggcctagtgaacctcaatcccagaatcctgctaaa
ccccacagcctttcccagaaacaccggccagcctctaaatccagcagaaaggctgcatca
gcaggacagaagagtagaaagagagagcctgatcaactggaagaggaagtggccggggag
gattattggacttcatacagagcctgggttgaatattacaattcatattatcaccattca
ccctacaactggatgactgcgtattacatgaattctgtctatattaaagaaatgatgaag
cactga
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