Labeo rohita (rohu): 127169111
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Entry
127169111 CDS
T09007
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127169111 (gapvd1)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
127169111 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
Motif
Other DBs
NCBI-GeneID:
127169111
NCBI-ProteinID:
XP_050972207
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All DBs
Position
8:13792488..13847388
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AA seq
1488 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNNEVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHAKVLEDTQFVDGYKTLGFQESIYGEFLGRLRENPRLVASCLVAGERL
NHEHTQGVIHTVFTSLYGNCIMQEDECYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKLIERFTPAQQERLFGEKGT
DEYRRKVQAAVEANEAKLVALVNTFIGYLKQNTYCFPQSLRWIVSQMYKTLARVERLEVG
EVRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMSDADDGD
PRRKSSLSKFDKTCVAAFLDVVIGGRAVETPPMSSMNLLEGLTRTVVYMTHNQLLALVDF
VRSVTAGDQLREEDHLALETLLANVPQSRTTKSNSLELTPSNTPQLSPATTPANKKNRLP
IGQQLAAITCWEPSATALSAHIPLVTPFAGSRSRSRSNMAQEGETEASSQESLQEVTPED
VLVISLGTSLQTVPGMMSENEVLTLHLGDGGQGDAPVDDTKLHGKPDKTLRFSLCSDNLE
GISEGPSNRSNSVSSLDLEVESVSEGGPGPSGSNGAEALQLLEHEQATTQDNLDDKLRKF
EIRDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENALGSMLCLPV
LLDPYGSTISETTSEAWSVEVLPSDSEAADLKQEERLQELESCSGVGSTSDDTEVREVSS
RPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEDSAHGAHSLSCAP
SQADSLLAMFDPLSSGEGSSTGTIVRPKVHYPRPPHPPPDPPIPEASITGHQEPRPPLFA
PHLVQSDLEHPKQRHSYPERLVRSRSTDVVSAGRRPNSDPGLNRRTMMEERDPAGAYSTG
PTSSPSKDSLKGESEDRKDSDDEKSDRNRPWWKKRFVPAIPKVLYWTAEGELPVPIGGLR
KRDKTEKDEQGAERVPQGIPDEPSALRQSSKAQSAEAIIDKYNKYIMEKRPAHSDGAVAG
NYVGQEHCREGDDDSPKDEGLQNISADDLPDSASQTAPPQDRTFSFSDIKKKLRLALCSA
DSVVFPIIPPATTRNGLPDHADPEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSH
LDPRTCRKLLTAMAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRYFT
TVCVRLLLEHMESKMLDFIKAFQGCTAADDKTAAVEDFLRYLYGAMAHDAIWQYASEEQL
QDAQMAIERSVMNRIFKLAFYPNQDGDIHRDELFHEHIQRLSKVVTANHKALQIPEVYLK
EAPWPSAQAEIRTINAYKTPRDKVQCILRMCSTIMNLLSLANEDAVPGADDFVPVLVFVL
IKANPPCLLSTIQYINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacattcacactctggcccaccacctgaagcaggaacggctgtacgtg
gcgtcagagaagcagctcatccagcggctcaacaacgaggtgcttaagacagcagagagg
ctctaccgcgcagcctggatcgccaagcagcaaaggatcaacctcgaccgcctcatcctc
accagtgcggaggcctctcctgcggaatgctgtcagcatgccaaggttctggaggacaca
cagtttgtggatggttataagacactgggctttcaggagagcatctatggggagttcttg
ggccgcttgagggagaacccacgattggtggcatcctgtctggtggcaggagagagactc
aatcatgaacatacgcagggggtcatacacacagtcttcacctcactctatggcaactgc
atcatgcaagaggatgaatgctacctgctgcaggtgctacgttatttggtggaatttgag
ctaaaggaaagtgacaaccctcgtcgtctgttacggcgaggcacgtgtgccttcagcatc
ctcttcaaactcttctctgagggcctgtattcagctaagcttttcctcactgcaaccctc
cacgagcccatcatgcaattgctggtggaggacgaggaccatctagagacagatccagcc
aaactgatagagcgctttaccccggcccagcaggagcgactatttggtgaaaaaggcaca
gatgagtaccgccggaaagttcaggcagcggtggaggccaacgaggccaagctggtggcc
ttggtcaacacttttattggctacctgaagcagaacacctattgcttcccacagagcctg
cgctggattgtgtcacagatgtataagacgctggcacgtgtggagaggttagaggtcggg
gaggtgaggacgatgtgcactgacttgctgctcacctgcttcatctgtccagccattgtc
aatcctgaacaatacggcatcatctcagatgctccaatcaatgaggtggcacgtttcaac
ctcatgcaggtggggcagttgttgcagcagttagccatgtctgatgcggatgatggtgat
cctcgacgtaaaagcagtttatccaagtttgataagacatgtgttgctgcctttttggat
gtcgtaatcggtggaagagcagtggagacaccacctatgtcgtcaatgaatttattggag
ggcctcacacggacagtggtttacatgactcataatcagcttttagctctggtggacttt
gtgcgtagtgtcactgctggagatcagctcagagaagaagaccacctggctttggaaacc
ctactagccaatgtacctcagtcccgcacgacaaagagcaacagcctggagctcacgccc
tctaacacgccccagctctccccagctaccacacccgcaaacaagaagaacagacttcct
attggacaacagttggcagccataacgtgttgggagccctctgccactgccctgtccgct
catatacccttagtaaccccatttgcaggctctcgcagccgaagccgatctaacatggcc
caggagggtgagactgaagccagctcccaggagtctctgcaggaggtcacacctgaggat
gtgctagtcatctcgttgggcacctcactgcagactgtacctggaatgatgtctgaaaat
gaggttctgactttgcatcttggagatggtggacaaggagacgcccctgttgatgacacc
aaactgcacggcaaacctgacaaaacgctgcgcttctcactctgcagtgacaacctggag
ggcatttctgaggggccgtctaaccgctccaattcagtttcttctttggacttggaagtg
gagtctgtgtcagaaggaggaccagggccctctggtagtaatggtgcagaggccttacag
ctactggaacatgaacaagccactacacaggataatttggacgataagctacgtaagttc
gagattcgggacatgatgggactaacagatgacagagacatttctgagactgtcagtgaa
acttggagcactgacgtcctgggcagtgactttgatcccaacatggatgaggaccgactg
caggagatagcaggcgctgcggcagagaacgccttgggcagcatgctgtgtctgccggtg
cttctggacccgtatggatctaccatctctgagacgacgagcgaggcgtggagcgtggag
gttctgccaagtgactcagaagctgcagacctgaagcaggaggaacgattgcaggagctg
gagagctgctcaggtgtgggtagcacttcagacgacaccgaggtcagagaggtcagctcc
cgacccagcaccccgggactcagtgtcgtttcaggcatcagtgccacgtcagaggacatc
cccaataagattgaagacctacgctcagagtgcagctcagattttggaggcaaagactcc
gtgaccagtccagatggagaagactctgctcatggagctcacagtctatcctgtgcaccc
tctcaagcagattcactgctggccatgttcgatcctctctcctctggagaaggttcatcc
actggcaccattgtgcggcccaaggtgcactatcctcggccccctcaccctccccctgac
ccgcctattccagaggccagcataacgggccaccaagagcctcgtccgcccctcttcgcc
ccccacctagtgcagagtgacctggagcatcccaagcagaggcactcctaccctgaaagg
ctggtcaggagccgcagcacagatgtggtgtccgctggccgcagacccaacagtgatccc
ggactgaaccgcaggaccatgatggaggagagagacccggctggggcttattccactgga
cccacctcttctcctagcaaggattcactcaaaggagagtctgaggacaggaaggacagt
gatgatgagaagtctgataggaacagaccctggtggaagaagcgctttgttcctgccatt
cctaaagtgctctattggactgcagagggtgaactcccagtgccaattggcgggctccga
aagcgagacaagaccgaaaaagatgagcaaggagcggagagggtaccacaaggaatacca
gatgagccttcagcgctcagacagagctctaaggcccagtcagcagaggcaataatcgac
aaatacaacaagtacatcatggagaagcgacctgcccacagtgatggggcagttgctgga
aactatgttggacaagagcattgtagagaaggagacgacgactctcctaaagatgaaggt
ctgcagaacatctctgcagatgaccttccagactctgccagtcagacagcgccacctcag
gacaggactttctccttcagtgatattaagaaaaagctacgcctggcgctgtgctctgca
gattcagttgtatttcccatcattccaccggcaacaacgcgcaacggtctaccagaccat
gcagatcccgaagacaacgagatcgtgtgctttctgaaggtgcagctggcggaggccatt
aacctgcaggataagaaccagatggctcagatccaggagactacgcgctgcgtcagccac
ctcgacccccgcacctgcagaaaactgctcactgccatggcagaggactacaggaaacgg
gctccgtacatcgcctatctgacacggtgcaggcaaggcctgcagacgtctcaggctcat
ctggagcgactcctgcagagagtgttgagagataaagaagtggccaaccgttactttacc
accgtctgtgtccgactgctcctggaacacatggagtcaaagatgcttgacttcatcaaa
gcatttcagggctgcacagcagctgatgataagacagcagccgtggaggatttcctgcgt
tacctgtatggagccatggcccacgatgccatctggcagtacgccagtgaggagcagctc
caggacgcccagatggccatcgaacgcagcgtcatgaaccgcatcttcaaactggcattc
taccccaatcaggatggggacatccacagagatgagctattccatgagcacattcagcgt
ctgtccaaagtggtgacagccaatcacaaagccctgcagatcccagaggtgtatctgaag
gaggcaccttggccctctgcacaggctgagatcaggaccatcaacgcctataagacccca
cgagacaaagtacagtgtatcctgcgcatgtgctctacaattatgaacctgctcagcctg
gccaatgaggacgctgtacccggggcggatgactttgtccctgtgctcgtctttgtcctg
attaaagcaaacccaccctgccttctgtccaccattcagtacatcaataatttctacgcc
agcaggctgagcggggaggagtgctattggtggatgcagttcactgccgccgtggaattc
attaaaaccatcgacgatcgcaagtga
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