Labeo rohita (rohu): 127169298
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Entry
127169298 CDS
T09007
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127169298 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127169298 (fip1l1b)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127169298 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
127169298
NCBI-ProteinID:
XP_050972508
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Position
1:complement(39540737..39552900)
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AA seq
558 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISATSAPPVTEEVTAT
TNSTTTTITTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAYGGT
PVNLNIKSAGSRAYGAGSKVKGIDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYF
NYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITVAAHAAKADF
TSPSNLYKAGLNPARISPPQWAGPASQEMSYYTKTPGTIDVIGGQTATISRVEGRRRHNL
EGNNIQVISEHPSSEAEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRMPIT
VPPPNFPPPTGGPPPSLIPNMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVNPWPGLM
DNPKQWDYYPRRDKEREKERERDRPRERGHERDHSPSAVAYNSDEERYRSYRDYGDRGYE
RHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEG
KEPSEERSADQENQEAME
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgcgagcgcaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaagaggctaaa
ctgacagcagctatcagtgcgacctctgcacctcctgttactgaggaggtcaccgcgact
accaacagcaccactaccaccatcaccaccactactggaaatggtgtggccagtcaggag
gaagcacctggagaagatgaagacagtgagagcgatagtgatgatgacgatgatgatgtc
cgcgtcaccattggagatatcaaaacaggagcgccacagtacacggcatatgggggaacg
ccagtgaatctgaacattaagtcagctggcagcagagcgtatggagcaggttctaaagtg
aagggcatagacctcgaagctccaggcagcatcaatggagttcctgtcctggaagtggac
atggagtcctttgaagagaaaccatggaggaaaccaggtgcggacttgtctgactatttt
aactatggttttaatgaggacacgtggaaagcatattgtgaaaaacagaagaggttacgc
atgggccttgacattctcaacattggatccaccaccagcaagatctcagttcagcagggc
cgtacaggtaacagtgagaaggagatcacagttgcagctcatgcagctaaagcagacttt
acctctccatctaacctgtataaagcaggactcaacccagcgaggatatcccctccacag
tgggcagggcctgcctctcaagaaatgtcctattatacaaagacgcccgggaccatagat
gtgattggcggacagactgccaccattagcagggtggaaggacgacgtcgccacaatctg
gagggaaataacatacaggtgatctcagaacatcccagctctgaggctgaaccagcaaag
atgccgcctccgttctttcccccgggaccgctgcctccaaacatcccacctcctccattc
ctccctcctcctgtcagtcaggctccacctctaatcccacctccacggatgcccataact
gttcctccacccaattttcctcctcccactggaggacctcctccttcacttattcctaat
atggacaacagtgggcacccaggaggatatgacggacgtcctgttgctccataccctttc
cccacaggtgggtttcctccacccatgcaaggagctgttaacccctggcctggtttgatg
gacaacccgaagcagtgggactactaccctcggcgagacaaagagagggaaaaagagcga
gagagagacaggccgagagaaaggggccatgagagagaccatagtccctctgctgtggct
tataacagtgatgaagaacgatatcgttcttaccgtgactatggagacagagggtacgag
aggcatcgggagcgatcgagccgtgagaaggaggagcgtcacagggagaggagacacaga
gagaaagaagaagggaggcacaagtcatcacggagcagtagcagacggagacatgacagc
gaggagggtgacagtcatcggcgtcacaagcataagaagtccaagaggagcaaagagggc
aaggagcccagcgaggagcgttctgctgaccaggagaaccaggaggccatggagtaa
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