Labeo rohita (rohu): 127169422
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Entry
127169422 CDS
T09007
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127169422 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127169422 (exosc1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127169422 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
127169422 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
PCB_OB
Motif
Other DBs
NCBI-GeneID:
127169422
NCBI-ProteinID:
XP_050972743
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All DBs
Position
1:14582938..14588131
Genome browser
AA seq
194 aa
AA seq
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MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRREDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgaaaggctctgcagcacggaggactgtatc
cccggtaccggcacgtatctgcggcacggctacatcttcgcttcgctcgcgggatacgtg
ctgagaaagaacgagggagaggagctcccggtgatttcagtcgttagagagacagaagca
cagcttttgcctgacgtcggtgccatcgtcacctgcaaggtgacgagcatcaacccccgt
tttgctaaagtccacatcttatatgtggggtcgacaccactgaaagaccggtttagaggc
acgatcagaagagaagacgtgagagcaacagagaaagataaggtggagacgtacaaaagc
ttcaggccaggcgacattgtccttgcaaaagtgatctctttgggcgatgtgcagtcgaac
tacctgctgaccacagcggagaacgagttgggcgtagtcgtggcccacagtgaggcgggc
gctcagatggtgcccatcagctggtgtgagatgcagtgtccacgcacacacgccaaagag
tttcgcaaggtcgcacgggtacagccggagtacctgcaggcctga
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