Labeo rohita (rohu): 127169895
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Entry
127169895 CDS
T09007
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
lroh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127169895 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127169895 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127169895 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127169895 (smarcb1a)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127169895 (smarcb1a)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127169895 (smarcb1a)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127169895 (smarcb1a)
SWI/SNF complex
127169895 (smarcb1a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127169895 (smarcb1a)
PBAF complex
127169895 (smarcb1a)
SWI/SNF complex
127169895 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
127169895
NCBI-ProteinID:
XP_050973522
LinkDB
All DBs
Position
8:15845845..15852027
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTYGQKPIKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEIFEGHDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRLGRDKKRTFPLCFDDHDPAVIHENATQPEILVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIESYPTDS
ILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacatacggacagaaacctattaaattccaactggaggaggatgga
gaattttacatgattggatcagaggtggggaattacttgcgtatgttcagagggtcttta
tataagcgctacccatcgctctcaagaagactagcgacagtagaggagagaaagaagata
gtagcatcatctcacgatcacggttacaccactttagccactagtgtgacgctgctgaag
gcctcagaagtagaggagatatttgaggggcatgacgagaagtacaaggccgtgtccatc
agcactgaacctccagcatatctcagggagcagaaagccaagagaaacagtcagtgggtg
cccactcttcccaacagttcccatcacttggacgctgtgccttgctccaccaccatcaac
cgcaatcgactgggacgtgacaaaaaaaggaccttcccgctctgctttgatgatcatgac
cctgcagtcattcatgagaacgccactcagcctgagatcctggtgccaatccgactggac
atggagattgacgggcagaagctgcgtgatgctttcacatggaacatgaatgagaagcta
atgactccggagatgtttgctgaaatcctttgcgacgatctggatctgagcccactgacc
tttgttccggccattgcctcggccatcaggcagcagatagagtcctaccctacagacagc
atactggatgagcagatggaccagagagtcatcatcaagttaaacattcatgttgggaac
atatctctggtggaccagtttgaatgggacatgtctgagaaggagaactctcctgagaag
tttgctctgaagctgtgctctgaactgggcctgggaggagagtttgtcaccactattgca
tacagcatacgcggccagctcagctggcatcagaggacctacgccttcagtgagaaccct
ctccccacggtggaaattgccatccgaaacacaggtgatgctgaccagtggtgtccactg
ctggagacactgacagatgctgagatggagaagaagatcagggaccaggacagaaacaca
aggcgaatgagacgacttgcaaacacggctccagcatggtga
DBGET
integrated database retrieval system
