Labeo rohita (rohu): 127169941
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Entry
127169941 CDS
T09007
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh00310
Lysine degradation
lroh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
127169941 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127169941 (prdm2a)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127169941 (prdm2a)
Enzymes [BR:
lroh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
127169941 (prdm2a)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
127169941 (prdm2a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
127169941 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2HE
zf-C2H2_ZNF462_1st
zf-C2H2_11
ADD_ATRX
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
127169941
NCBI-ProteinID:
XP_050973591
LinkDB
All DBs
Position
8:complement(18691294..18700506)
Genome browser
AA seq
1481 aa
AA seq
DB search
MWRSDDIVEEERPSIPSEVFLQQPEVQDVHSDEIALHSVSEPEGREIEKGTEHEKMDCKD
KQNSSKSVSQNLANQNQPCQTSEIEHVGMIKQDYGTELPLNDTKGDLDPGRKPQGELPCP
RCERRFASSQGLQRHIQTHALSTCHTQRYKCSRCRRTFSTLFSRRRHEKRHETRNRKTDD
LTDAPCTASQNVPGSAEPLKTASEPNKCINGEQKDDKNSDVKASHVCKYCKKAFRTHTSL
RRHQRRIHERHLLPRGVYKKVKIIQEPEGQQLVETAQDSHTANAKCAEDIDQEREYMVDI
SSNISENLSFYIDGKIVSTSAVSNCEVIEMNSGGSAVIGLNAVIISPAQITQALKLETNT
SGFTSDLSGQSSTRRRTSTPPLLPQIKTELESETILSTSSSSLSSLTLSSTSGAPLVATH
LPQCVETVAFHKEKTVYLSPKLKQILQNQDGSKQAFALIADGHKLGPPLSLTVLPATTSR
FKRRTTSPPSSPQQTPDMNIEEQDQDSTKAKIPKLESRGLSPLGNEEPEPLTSPINSSDG
APMQQQILPLDCSVSRTGGNSCNQQPLDLSNSVVKQESSDALAESILDLSISGKSLDCDP
AGVYLTQPAVRKSKPNSSMLQKVLMNEYGGADVPSVEAPAAEGVLSVSGIANLAVVAVSD
AGPPKPEKFLFELALPSASINPTPPLLAPISIHPPTPVPPPQCSSPTFVSFLSTPTVEPS
QDIQTLHSAFVVTDNAPPTGSGDDCADNPVHLSQGDLKVTIPDWGSSAPGGLETLIPAVP
SLSLQSPHWVSDPAVCELAQRTLVVDSVLASDPQIFSPPLPVNQSNVTSLAFPPNTVVIE
YTVAVQSTENILPALSDKIPVDALQQEPYVPTEPQPPSPDTTLLTETSTELAPTEQSTSH
TDTLSLTASTSVAEAESNENGQENIQSSDCSKQENKFEEELPPLHPFCKNFMCNVCEQPF
QSMKILSQHIGEHSKEWPYKCEFCVQLFESDTGLLEHRSSYHGIGKIYVCKTCSKEFAFL
CNLEQHQRDLHPGQECSHTEAVHGKLRPENHNSPKTNMADPVLPITEIKQEFDNTTSKAE
KDVLENTSEELFTTIKIMASGGVKSKGPDVRLGINQHYPSFKPPPFPYHNRTPTGTTAAS
ATNFTTHNIPQTFSTAIRCTKCGKSFDNMPELHKHILACANASDKKRYTPKKNPIPLKQF
AKAQNGVLSPARMVNSKQNFSQKLGQPKKMNFHNSPVKMSILNKKKSQLVQRGRPAGGRK
AFAQDDLGVFACPHCRREFTYNASLKKHVAFSCPMRPASRISTKKRTLSIVSAQENNGSL
RRQIANMSAKPQGSDQGPKTITKNQIIKQNTAVDSTQDFRLKRSTILSTSVVQSSKKAKP
ILKSGFMPQLASKQIVFSSVTQVNSQEPGVRVHVLGRKMEQRVGDIKIQTRREDRLSLRL
RERVGGPVTRSVQQASTTTTVLKQPDSHNIIMRPVVLQVKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgtggagatcagatgacattgtggaagaggagagacctagtataccatcagaggttttt
ctccagcagcctgaggttcaagatgtccactctgatgaaattgcacttcatagcgtctca
gagccagaagggcgagagatagaaaaagggacagaacatgagaagatggactgcaaagac
aaacagaattcaagcaagtctgtgtcccaaaatctagctaatcaaaatcaaccctgtcag
acaagcgagattgagcatgtcggaatgatcaaacaggattatgggactgaattgccttta
aatgacactaagggtgaccttgacccaggtaggaaaccccagggtgaactaccctgtcct
cgctgtgagagaaggtttgcgagtagtcaaggcctgcagcgtcacatacagacacatgct
ctttcgacctgccacacacagcggtataaatgcagtcgctgcagaaggactttcagcaca
ttgtttagtcgtcggaggcatgagaaaagacatgaaactagaaataggaagacggatgat
ctcacggatgccccttgcactgccagccagaatgtgcctggcagtgctgaacctctaaaa
acggcatcagagccaaacaagtgcattaatggtgaacaaaaggacgataaaaacagtgac
gtcaaagcctcacatgtctgcaagtactgcaaaaaagcatttaggactcatactagtcta
aggaggcatcagcgcaggatccacgagcgccatcttcttcctagaggagtttataagaag
gtcaaaatcattcaagaacctgaaggacagcagcttgttgagacggcgcaggacagccat
actgctaacgcaaaatgtgcagaagacattgatcaggaaagggagtacatggttgacatc
tccagtaacatttcagagaatctcagcttctacatagatgggaaaattgtctcgacaagt
gctgtaagcaactgtgaggtaattgagatgaactccggtggctctgccgtgattggatta
aatgctgttataatcagtccagctcaaattacacaagctcttaaattagaaactaatacc
agcggttttacctctgacctgtctgggcagtcctcaaccagacgtaggacatcaacccca
ccattactcccacaaataaaaacagaattagagtctgaaaccattttgagtacctcctca
tcttccttgtcatccttaacactgtcctctacatccggagctccgctggttgctactcat
ttacctcagtgcgttgagacagtcgcctttcacaaggaaaaaactgtctatctgtctccg
aaactcaaacagatcctgcagaatcaggatgggagtaaacaggcatttgcgctgattgct
gatggccacaaattgggtcctcccttatccctaactgttttacctgcaacaacatctaga
tttaagagaaggacaacctcccctcccagctcaccccagcaaacccctgatatgaatata
gaagagcaagatcaggattctacaaaagccaagataccaaagttggagagccgtgggttg
agccctttgggcaatgaagaacctgagcctttgacttcacccataaacagctctgatgga
gctccaatgcagcaacagatcttgccgttggactgctctgtatcaagaactggtggaaac
tcctgtaatcaacaaccattggacctctcaaattctgtggtcaagcaagagagcagtgat
gccttagcagagtccattctggacttaagtattagtggaaagagtttagactgtgaccca
gctggagtctacctcactcagcctgctgtgaggaagagtaaacctaactctagtatgctt
cagaaggtgcttatgaatgagtacggtggggcagacgttccttcggttgaagctccagct
gctgaaggcgtcctcagtgtttctggcatagcaaaccttgcagttgtggcagtgtctgat
gcaggtccaccaaaacctgaaaagttcttgttcgagttggctcttccttctgcttcaatc
aatccgacccctcccctgctcgctcccatcagtatccatccacctaccccagtccctcca
cctcagtgttcatctccgacttttgtatccttcctatcgactcccacagtggaacccagt
caggacattcaaactcttcattcagcctttgtggtaactgacaatgcaccacccacaggg
tctggggatgactgcgctgataatcctgtacatctttcacagggtgatttgaaagtgaca
atccctgactggggttcctctgctcctggaggtctggaaactcttatacctgcagtccct
tcactaagtttacaaagccctcactgggtttctgatcctgcggtatgtgaactagctcaa
agaacattggttgtagactctgtgctggcttctgatccacagatattttctccacctctg
cctgttaaccagtccaacgtcacgtccttggcttttcctccaaacactgttgttattgag
tatacagttgcagtgcaatctacggaaaatattcttccagctctctcagataaaattcct
gttgatgcattacagcaagaaccttatgtcccaacggagccacaacctcccagtcctgac
accaccctgctaactgaaacctccacagagttggcacctacagagcagtcaacaagccat
acagatacattgtccctcactgcttccaccagtgttgctgaagcagagagcaatgagaat
ggacaggaaaatatccagtcctctgattgttctaagcaggaaaacaaatttgaagaagag
ttacctcccttgcatcctttttgcaagaacttcatgtgcaatgtttgtgaacaacccttc
cagtccatgaagattcttagtcaacacataggtgagcactcaaaggagtggccctacaaa
tgtgaattttgcgtgcagttgttcgagagtgacacaggtttgctggagcaccgttccagt
tatcacggcattggtaaaatttacgtttgtaaaacatgttctaaggaatttgcttttctc
tgcaacttggaacaacatcagcgagatctccatcctggtcaagagtgctcacacactgaa
gcagtacatggcaagttaagacctgaaaaccataacagtcccaaaaccaacatggctgat
ccagtccttccaatcacagaaattaagcaagaatttgacaacacaacctcaaaggcagag
aaggatgtcttggagaacacttctgaggagttgttcacgacaataaaaatcatggcatct
ggaggggtcaaatcaaaaggaccagatgtacgtttaggcattaaccaacactacccaagt
ttcaaaccacctccttttccataccacaaccggacaccaactgggacgacagcagcatca
gccaccaacttcaccacccacaacatccctcagaccttcagcacagctattcgttgcacc
aagtgtggtaagagctttgacaacatgcccgaactgcacaagcacatcttagcttgtgca
aacgctagcgacaagaagcggtacactcctaaaaagaaccctataccacttaagcagttt
gcaaaagcgcaaaatggggtgttgtcacctgcaaggatggttaatagtaagcagaatttc
tctcaaaagctcggacaaccaaaaaaaatgaactttcacaattcgccagttaagatgagt
atcctgaataagaagaaatctcagctggtgcaaaggggcagacctgctgggggaagaaag
gccttcgctcaggatgacctgggcgtttttgcatgtcctcactgtaggagagagtttaca
tacaatgctagtttaaagaaacacgtagctttcagctgccccatgagacctgccagtaga
atctccactaaaaaaagaacactgagcattgtttcagcgcaggagaacaacgggagcctt
cgcagacaaattgcaaatatgagcgcaaagccacaagggtcagaccaaggcccaaaaaca
ataacaaagaatcagatcattaagcaaaacacagcagttgattccactcaggattttagg
cttaaaagatctaccattctgtcaacatctgtggttcaatctagcaaaaaagccaagcct
attttaaaaagtggctttatgccacagctggcttcaaagcagatagtcttctcttctgtc
actcaggttaactctcaggagccaggtgttcgggtacatgttttagggagaaagatggag
cagagagtgggtgacataaagatacaaaccagaagagaggaccgtttgtctctgaggttg
agagagagagtaggaggacctgttactcgtagtgtgcagcaggccagcaccacaacaaca
gtccttaaacagccagacagtcacaacatcatcatgcgtcctgttgttctccaagtcaag
aaatga
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integrated database retrieval system
