Labeo rohita (rohu): 127170094
Help
Entry
127170094 CDS
T09007
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127170094 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127170094 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127170094 (col2a1a)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127170094 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
Motif
Other DBs
NCBI-GeneID:
127170094
NCBI-ProteinID:
XP_050973821
LinkDB
All DBs
Position
8:complement(22588588..22608018)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGGCVQDGQQYADRAVWKPEACRVCV
CDAGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGEKGPKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPPGPPGKSGSDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGANGENGAPGPMGPRGLPGERGRPGPPGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GATGPKGTTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGATGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLLGRPGLRGLPGKDGETGASGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGIPGEGGAAGPTGPRGERGFPGERGSAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGTVGIPGAKGDRGDTGEKGPE
GAPGKDGSRGLTGPIGPPGPSGPNGAKGETGPIGSVGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGEAGQKGESGSPGPQGPSGAPGPVGPTGITGPKGARGAQGAPGAT
GFPGAAGRVGPPGPNGNPGPVGPAGAAGKDGPKGVRGDAGPPGRPGDAGLRGPPGAPGEK
GEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSGGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGSPGDQGAAGPAGPSGAKGPAGPVGPAGKDGANGQPGPIGPPGPRGRSGES
GPVGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADDASSSLRQHDVEVD
ATLKSINTQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSPADAIKVFCN
METGETCVKPSTPKIPRKNWWTSKSKAQKHVWFGESMNGGFHISYADSSQTPSTTSIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactttggcggctgcgtccaa
gatggccagcagtatgcagaccgtgcggtatggaagccagaagcgtgccgcgtctgcgtg
tgcgatgcaggggcagtgctatgtgatgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaagggacagaaaggtgaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacccccaggagagcagggaccacgtggcgag
aaaggacctaagggtgagaagggaaatcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggcccccctgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacctggccctgct
ggtccacttggaccccgtggcccacctggaccccctggaaaatccggaagtgatggtgag
gctggcaaacctggtaaagctggtgagcgtggacccccagggcctcagggagcccgtgga
ttccctggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggtgctaatggtgag
aacggtgctcctggaccaatgggtccacgtggtctgcctggtgagagaggtcgccctgga
cctcctggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcctactggagctcgtggacctgagggcgcacaaggaccccgtggagaggccggt
acacctggatcacctggacccgctggtgcatctggtaaccctggtactgatggtattccc
ggtgccaaaggatctgctggtgctcctggcattgctggtgcccctggtttcccaggaccc
cgtggtccaccaggacctcagggagctactggaccccttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgca
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggacctctcggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggacggtttagctggagcaaagggcgcacctggcgatcgtggtgttcca
ggtgcaaccggcccgaaaggaacaactggagatcctggccgcacaggcgagcctggtctt
cctggagcaagaggtctcactggacgccctggtgatgctggacctcaaggaaaagttgga
gcaactggtgcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgagcctggaaaa
cctggagagaaaggacttcttggacgccctggtcttagaggtttgcctggtaaagatgga
gagactggagcttctggtccacctggccctgctggtccagctggtgagagaggagaacag
ggtcagcctggtccatctggcttccagggtcttccaggacctactggagcccccggagag
cctggtaaacctggtgaccaaggtattcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaagcgctggccctcagggtcttcag
ggaccaagaggacttccaggaactcccggtactgatggacctaagggtgcaattggacca
gctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagagagga
actgttggaatccctggagcgaaaggtgacagaggtgacactggagagaaaggacctgaa
ggtgctcctggcaaagatggttctagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggatcagttggtgctcctggt
gctcgtggtgcccctggtgaccgtggtgagattggtgcacccggacctgctggctttgct
ggacctcctggtgctgatggccagcctggaattaagggagagcagggtgaggcaggacag
aaaggtgaatctggatcccctggaccccaaggaccatcaggagcacctggcccagtgggc
ccaactggtattacaggacctaagggagcacgtggagcccagggagcccctggtgctact
ggtttcccaggtgctgcaggaagagttggaccacctggccccaatggaaaccctggtccc
gttggccctgcaggtgctgctggtaaagatggtcctaagggagttcgtggtgatgccggt
cccccaggcaggccaggagatgctggcctgcgtggacctcctggtgctcctggagagaag
ggagaggctggagaggatggtcctcctggtcctgatggtccttccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggattccctgga
cttccaggaccctctggtgagcctggcaaacagggagctcctggatctggtggtgaccgt
ggacctcctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctcctggtgtgaagggt
gagcgtggtaacactggtccgattggtgctcctggagctcctggtgcacctggtgctcct
ggttccgttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggacctccaggacccgctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtctgaagggacacagaggattcacc
ggtttgcagggtctgcctggacctcctggttctcctggagaccagggtgctgctggacct
gctggaccaagtggcgctaaaggacctgcaggacctgttggaccagctggtaaggacggt
gctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagagtct
ggcccagttggtccacctggtaaccctggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttgtctcagcccgagaagggacctgatcctctg
cgttacatgcgtgccgacgatgcctccagctctcttagacaacatgatgtggaggtggat
gccacacttaagtccatcaacacccagatcgaggacatccgcagcccagatggctcccgc
aagaacccagcacgctcttgcagagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcccaaccttggtagccctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggaccagcaagagcaaggcgcagaagcacgtgtggtttggagagagcatgaatggtgga
ttccacatcagctatgctgatagcagccagactcctagtactaccagcatccagctgaac
ttcctcagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gttgcttacatggaccaagccacaggcaacctgaagaaggccgttctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctccaatggacatcggaggagcagatcaggag
tttggagtggacattggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
