KEGG   Labeo rohita (rohu): 127170095
Entry
127170095         CDS       T09007                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127170095 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lroh03041]
    127170095 (sf3a1)
Spliceosome [BR:lroh03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    127170095 (sf3a1)
 Complex B
    127170095 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    127170095 (sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 127170095
NCBI-ProteinID: XP_050973823
LinkDB
Position
8:complement(9814471..9823229)
AA seq 782 aa
MPPGPVQIMQPELNNKPEDQKEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSAAVPKVMQQQQAASQQLPQ
KVQAQVIHETVVPKEPPPEFEFIADPPSIAAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWA
KFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILI
QERYEKFGESEEVEMEVESEDEEDEREGREDGHASQLDQDTQLQDMDEGSDEDDDGMKAP
LPPDNPLPPPLPPTPDQVIIRKDYDPKASKPLPPVAVPDEYLISPITGEKIPASKMQEHM
RIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDDTKEKIGPSK
PNEIPQPPMPSVAPSLPKPTPPVSTAPTMAPPVRTTLLPAVPVIPRPPVAPVVRLAPGQV
LAPMPPMLHAPRINVVPMPPSAPHIMAPRPPPMVVPAAFVPAPPVPQPPSTVAAPMPPAH
PPPPHEDEPSSKKMKTEDNLIPEDEFLRRNKGPVAVKVQVPNMQDKTEWKLSGQVLNFNL
PLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALKERGGR
KK
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtgcagataatgcagccggagctaaacaacaagcccgaggaccag
aaggaagagactccagccacaaagcccattgttggcatcatctacccgcctcctgaagtc
cgaaatattgttgacaagactgccagcttcgtggccagaaatggacctgagtttgaggcc
agaattcgacagaatgagatcaacaatccaaaattcaacttcctcaaccccagcgaccct
taccatgcctactaccgccacaaggtcaatgagttcaaggagggcaaagctcaggaacca
tctgcagctgtgcctaaagtcatgcaacagcaacaagcagcatcacaacagcttcctcag
aaggttcaagcacaagtgatccacgagacggtggtgcccaaggagcctccacctgagttt
gagttcattgctgaccctccctccattgcagcctttgacctggatgtggtgaagctgacc
gcacagtttgttgcccgaaatggccgccagtttctcacacagttgatgcagaaggaacag
aggaactaccagtttgactttctacggccacagcacagcttgtttaactactttacaaaa
ctggtggaacaatacacaaaggttttaatccctccaaaaggtcttctgctgaaactgaag
aaggaagcagagaatcctcgtgaggttttggaccaggtgaggtatcgtgtggagtgggcc
aagttccaggaaagagaaaggaagaaggaagaggaggagcgagaaaaggagagagtggct
tatgctcagattgactggcatgactttgtggtggtggagactgtagacttccaaccaaat
gagcaaggaaatttccctcctcccacaactcctgaggagctgggtgctcgtatcctgatt
caggagcgctatgagaaatttggagagagtgaggaggtggagatggaggtagagagtgaa
gatgaagaggatgagagagagggcagggaagatggacatgcatctcagctagaccaagac
acacagctacaggacatggacgagggctctgatgaagatgatgatggcatgaaggctcct
cttccccctgataaccccctgccaccacctctgccccccaccccggaccaggtcattatc
cgcaaagactatgaccccaaggcctctaagcctctgcctcctgtggccgtccctgatgag
tacctcatctctcccatcactggtgagaagatcccagccagtaagatgcaggagcacatg
cgcatcgggctgttggacccccgctggctagagcagcgtgaccgcagcattcgagagcgt
cagattgaggaggaagtgtatgctcccggcctggacatcgagagcagtctgaagcagctg
gccgagagacgtactgatatcttcggtgtggaagaaacggccatcggtaagaagatcgga
gaggaggagatacagaaaccagaggagaaggtcacatgggacggtcactcaggcagtatg
gctcgtacccagcaggcggctcaggctaacatcaccctacaggagcagattgaagccatc
cacaaagctaaaggtctggtacaggaggatgacacaaaggagaagattggccccagcaag
cccaatgaaattcctcagccacctatgccatcagtagcccccagcctgcccaaacccacc
ccaccagtcagcaccgcacctactatggcgcctccagtgcggaccacattgctccctgca
gttcctgtcatacccagacctccggtggcccctgtggtgcgcctggcccctgggcaagtt
ctggcccccatgccacccatgctgcatgccccacgcatcaatgtggtgcccatgccgccc
tctgcaccccatattatggcacccagacctccacccatggtggttcctgctgcatttgta
ccagctccccctgtgcctcaacctcccagcactgttgccgcccccatgcctcctgcccat
cctccacctcctcacgaggatgaaccttctagcaagaaaatgaagacagaggataacctg
attccagaagatgagttcctgcgcaggaacaagggacctgttgcagtcaaggttcaggtg
ccgaacatgcaggacaagacagaatggaagctgagtggccaagtgctcaacttcaacctg
cctctcacagaccaggtgtcggtcatcaaggttaagatccatgaagccactggtatgcca
gctggaaaacagaagctgcagtatgagggtattttcatcaaagattccaactctctggcc
tattacaacatgaacaatggatccgtcatccatctggcccttaaagaaagaggtggaagg
aagaagtag

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