KEGG   Labeo rohita (rohu): 127170262
Entry
127170262         CDS       T09007                                 
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127170262 (patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lroh03019]
    127170262 (patl1)
Messenger RNA biogenesis [BR:lroh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     127170262 (patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     127170262 (patl1)
SSDB
Motif
Pfam: PAT1 DUF3280
Other DBs
NCBI-GeneID: 127170262
NCBI-ProteinID: XP_050974074
LinkDB
Position
1:15804364..15816511
AA seq 768 aa
MFHFQSFDDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERVRDGL
HGAGDASSVDLPPAGGNAHSSALPQPSSSSRLYPDINERGGGDLAESLTRLILGSDPAIA
GVGTASSDRSRLPPMLSGQPPQPSALAGQSSLLLSYQQQQQLLHRGPAPLSQINSHSIWE
NSMGFSPVSSGLVTQKEDKTLMSIIKEVGLPNRPPAHRDEGRDLSERVPPPRSCSPVIGS
PPVRAVPIGTPPKQPMSQIHNQHQQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIAN
SPLSHPPFPAGVGPVLSQLQRAQLLNSQVGQFQRGPAPPILQGGVGGFRPFFGQSGPRVG
PHGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGSGDHVGGRGVGDRKNRDPYSNLMTQR
EKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEH
TYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYS
LLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRK
GKRLISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSMSSTSL
TDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVT
RELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq 2307 nt   +upstreamnt  +downstreamnt
atgtttcattttcagtcttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcgatgat
gattggcaggaggagcacgcccgcctcgcagagcttgatgagcgggtacgagacgggctg
catggagcaggcgacgcctcctctgttgacctccctccagctggcggcaatgcccactct
tcggccctccctcaaccctcctcttcctcccggctttaccctgacataaatgaacggggt
ggtggtgacctggcagagtcactgactcgcctcatcttgggctcggatccggctatcgct
ggagtgggcaccgccagctcggacagatctcgccttcctccgatgctgtccggtcagcct
cctcagccttcggcattagctggacagtcttctctgctgctgagctaccaacaacagcag
cagctcctgcacagaggaccggctcctctttcacagataaattctcacagtatttgggag
aacagtatgggcttcagtcctgttagttctggactagtcactcaaaaagaggacaaaaca
ctaatgtccattatcaaagaggtcgggcttccaaatcggcctcccgcacacagggatgaa
gggcgagatttgtccgaaagggttccgcctcctcgctcctgctcacctgtgattggaagt
ccacctgtaagggctgtacctattggaacacctccaaaacaacccatgagtcaaattcac
aatcagcatcagcagaataatcacccatcagccattcatgtgagagcctctgtgccacta
cgctacccacctcccttccctgagcgtctgtcccctaacaacctcctcagcatagctaac
tcaccgttgtctcatcctccgttccctgctggtgttggtcctgttctttctcagttacag
agagcccaacttctcaactctcaggttggtcagttccagcgtggtccagctcccccaata
ttacagggaggtgttgggggtttcaggccgttctttgggcagtctgggcctagagtgggt
ccccatgggcctcctctcggccacgcacccatccgacacaacaccacccaccttcacccg
cagcaccgcaggatgctcaaccagaggatgcagaacagaggctcgggtgatcacgtcggc
gggagaggtgttggagacaggaaaaacagagatccctacagcaatctgatgacacaaaga
gagaaggaatgggtggcgagaatccagatgatgcagcttcaaagcactgatccgtatctg
gatgactactattaccagaattattatgagaagatggagaagcgtcaggagcgggacaga
gacaacaggaaggagcacaccaccaaactcatcactcctcaagtggccaaactggagcac
acctatcggccagtgcagtttgccggctcgttaggaaaactcactgtctccagtgtgaac
aatccaaggaaaatgattgatgctgtggtgaccactcgcagtgatgatgaggaaaaaaga
gaaaagcaagtgtggaacaaaagacggcaaatcctttacactgtggagaagatgtacagt
ctactactagaagtgcaagactttgagaagaagtttttgcagacccctgagcaccaaaga
gatgccctgctagaacagcataaaacccacacgctgcaactctacaactccctccgggaa
aaagagtgggacgaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgcaag
gggaaacgcctcatttccagactcctccccttcctgccacagccacaggctgctgctgtt
gtcatgggaatagccaggaaccttccggctctggccaagaaagacaaacaagaccaggta
ctgtgttggttggtagagccagtgactgcagtaatccagtccatgtcgagtacttccctc
accgacctcctccaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaat
aagtttggcgtgacgttgctctatctgattctgagtgaaggagagaggatgcagagctcc
gatcccaactgtcagctcatggatgataaccgctggactgagttggtgttctctgtgacg
cgggagcttttgaaggtcccgtcctctgcgctctcatctccgctgttcactcccccaaac
ctagtgtcactgttctctcgatatgtggaccggcagagactcgagctcttgcaggagaag
ctacagatcacagccctgtccaggtag

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