Labeo rohita (rohu): 127170363
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Entry
127170363 CDS
T09007
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127170363 (pcdh18a)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127170363 (pcdh18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Shisa
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
127170363
NCBI-ProteinID:
XP_050974202
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Position
1:40254017..40261777
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AA seq
1135 aa
AA seq
DB search
MDTSKGTVFCATLLKLAVLVTLARHVSAKTLKYQVYEEQKVGTVIARLREDVADVLSKLP
SSIPLRFRAMQRGSASLLSVRDQDGEISIRTKIDREKLCEKNLNCTIEFDVLTLPTEHLQ
LFHIEVEILDINDNAPQFARPVIPIEISETAAVGTRIPLDSATDPDVGENSLNTYSLTPS
DFFMIDILTRTDGAKYAELVVLKELDREVRASYELQLTASDRGVPPKFGTTLLKISIADS
NDNNPVFEKPSYVINLLENSPIGSLLIDLNATDPDEGTNGKIVYSFSSHVSPKIVETFKI
NSDNGHLTLMRKVDFESTNSYDIDVQAQDMGPNSMPAHCKVIIKVVDVNDNKPDISINLM
STGNEEIAYISETDPVDTFVALVRVDDLDSGLNGEVECRLHGQGHFRLQKTYEKNYMILT
NVTLDREKRSEYSLSVIAEDKGSPSLSTIKHFTVQVQDENDNAPKFEKSRYEISKVENNS
PGAYLSSVRASDPDLGPNGQVSYSILETAVHGSPISTYVTIDPSNGDIYALRTFDREDVS
QISFLLQARDSGSPPLRSNVTVVLTVLDENDNRPVIMMPQLWNHTADVPVSKYAEVGDVV
TVVRAIDRDFGANGDLSCSIVGGNEAGYFSMDAKTCEIRTNVSMQDVPQDHVELTIQVQD
HGSQPLSARALLRLSLYENIENHMNPHQTGGGTKDGSVDVSRIIIISLVVVCVILVLIMV
AFALHCSRENKETRSYNCRVAESTYQQHPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSP
TSSPGPERAHMGSRQSQHSRQSLNSLVTISSNHIPENFALELTHATPPVEQVSQLLSILH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSDAGDSDCEMGRDSPIDRLLGD
GFGDLFHSDGHHRLHPAVMKLCTEECRVLGHSDQCWMPSQLSSDYRANMYIPGEESRPQV
LEEDQQSVDSAKKSFSTFGKDNEEECGGSLLSEMNNVFQRLLPTSYAEVNELEGCTGPPT
SSIGMEIRKGFLPGKASSTGSAYPQGVAVWAANTHFQNPGGAVTGGHGSANHAASQAHLK
WLPAMEEIPENYEEDDLESVLSQRQGKRNDTRHEVVDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggataccagcaagggcacagtgttctgtgccactttactcaaacttgctgtgctcgtg
acattggcacggcacgtctcggctaaaactctgaaataccaagtttacgaagagcagaag
gtgggtacagtaatcgccagacttcgagaagatgtcgctgatgttttgtccaaacttccc
agctcgattccgttacgctttagagccatgcagcgcggcagtgcgtctcttctctccgtg
cgcgaccaggatggagagatcagcatcaggaccaaaatagaccgcgagaaactgtgcgag
aagaatctcaactgcactatcgaatttgacgtcctcaccctccccacggagcacctacag
ctgttccacatcgaagtggaaattttggacattaacgacaatgcaccacagttcgcgcgc
cccgtcattcccatagagatctccgaaaccgccgccgtggggacgcgcattccccttgac
agcgccaccgatccagacgtcggagagaactcactgaacacatactctctgaccccgtct
gacttctttatgattgatattctaaccagaaccgatggcgccaagtacgcggagctcgtt
gtgcttaaagagctggatagagaggtgcgagcgagctatgaactccagctcaccgcctca
gacaggggcgttcccccaaaatttggaacaacgcttctgaaaatcagcatagctgactcg
aacgacaacaatccggtgtttgagaagccatcttatgtgatcaacttgcttgaaaattcc
cctataggcagtttgcttattgatctgaatgctactgacccagatgaagggaccaatggt
aaaatcgtgtattcttttagcagtcacgtgtcgcctaaaatcgtagagacttttaagatt
aattctgataatggtcatttgacactaatgaggaaagttgacttcgaaagcacaaattcc
tatgacatagatgttcaagctcaagacatgggccccaactcaatgccagcacactgtaaa
gtcataataaaagtggtggatgtgaatgacaacaaacctgatattagcatcaacttgatg
tccactgggaatgaggagatagcttatatatcagagacagatcctgtagatacatttgtg
gctctggtgagggtagatgacctggactccggtttgaatggagaagtggagtgccgtctc
cacggccagggtcatttcaggctgcaaaagacttatgaaaagaactacatgatccttaca
aatgtaactctggaccgagagaagaggtccgagtacagcttatctgttattgctgaagac
aaaggatctccaagtctatctaccatcaaacacttcactgttcaggtccaggatgagaat
gacaacgcgccaaagtttgagaagagcaggtatgagatctccaaggtggagaacaactca
ccaggagcttatttgtcatctgtgagggcctcagatccagacctgggcccgaatggccaa
gtgagctactctatacttgaaactgcagtccatgggagccccatctccacttatgtcacc
attgacccctctaatggagacatttatgcgctacgcacttttgatcgcgaagacgtgagt
cagatctcattcttactccaggcccgggattctggaagtcccccgctgcgtagtaatgtg
accgttgtgttgactgtcttggatgagaacgacaacagaccagtcatcatgatgcctcag
ctgtggaaccacacggctgacgttccagtgtccaaatacgcagaggtcggtgatgtcgta
actgtagtccgcgcgatagaccgagattttggtgccaacggtgacctttcgtgttctata
gtagggggcaacgaggcaggttatttctctatggacgctaaaacatgtgaaattcggacc
aacgtcagcatgcaggatgttccacaggatcacgtggagctgaccatccaagtgcaggac
catggttctcaacccctcagtgccagagccctgcttagactttcgctttatgaaaacatt
gagaaccacatgaacccacatcaaacaggtggaggaaccaaagatggctctgtggacgtg
tccaggatcatcattatctcccttgtggtggtctgcgttattctggttctcatcatggtg
gcctttgcccttcactgctcacgtgaaaataaggaaactcgctcatacaactgtagggtg
gctgagtctacttatcaacagcacccaaaaaaaccctcacggcagatccataagggcgac
atcaccctggtgcccactgtcaacgggacccttccaatccgggcgcaccatcgctcaccg
acctcctcgccaggacctgagcgggcccacatgggcagccgacagagccaacacagccgc
caatcattgaacagcttggtcactatttcctccaatcacattcctgagaacttcgccctg
gagctgacacatgccacgccccctgtggagcaagtctcacagctcctctcaatactccat
cagggtcagtatcagccgcggcccagcttcagagggaacaaatactctcgcagctacagg
tacgccctccaggacatggataagttcagtctgaaagatagtgggcgtggcgacagtgat
gcgggcgacagcgactgcgagatgggccgcgattcgcccatcgaccggttgctaggcgac
ggcttcggagacctcttccacagcgacggacaccaccgtctccacccagcagtcatgaaa
ttgtgtacggaggagtgccgtgtgttgggtcactctgaccagtgctggatgccatctcag
ttgtcttcggattaccgtgcgaacatgtacatccctggagaagagagcaggcctcaggtc
ctcgaggaggaccagcaatcagtcgactcagctaagaagagcttttctaccttcggaaag
gacaacgaggaggaatgcggcggttcgctgctgtcagaaatgaacaacgtcttccaacgt
ctcctgccaacttcttacgctgaggtcaatgaactcgaaggatgcaccggccctcccacc
tcctccatcggcatggagatcagaaagggcttcctgccgggtaaagcatcatctacgggc
tccgcctacccacagggcgttgctgtatgggcggccaatactcactttcaaaatcccggc
ggtgccgtgacgggcggacatggctcggccaatcacgcggcatcgcaagcacatttaaaa
tggctgccggcgatggaggagatcccagagaactacgaagaggacgacttagagagcgtg
ctcagccagcggcagggaaaacgcaacgacacgagacacgaagttgtcgacgctagcgaa
ctggttgccgaaattaacaagttgcttcaggacgtacgccagagctaa
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