Labeo rohita (rohu): 127170481
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Entry
127170481 CDS
T09007
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
127170481 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127170481 (lmo7a)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
127170481 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ_6
PDZ
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
127170481
NCBI-ProteinID:
XP_050974406
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All DBs
Position
9:complement(14749997..14807499)
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AA seq
1888 aa
AA seq
DB search
MEWRPQSEVGYEAAYSEAQRWIEAVTEKKFGSSNFRSSLENGLLLCDLINKIRPGVVKKL
NRLSTPIAGLDNISLFLKACAKLGLKEAQLFHPGDLQDLSTRVTVKHQESSRRLKNVLIT
IYWLGRKAYADPFYNGPYLKLKAFEGLLGTALYKALEDSTSLRGSVRNSSCRDSWYSEKE
ELFPLRAGHRREDSLDSLDSLGSRTYSTSSDATLKGSSEGCGSDPEADLSFMMSENKEYR
RSLVIAPKTTTQFNQFLPTKDKQTGYVPAPLRKKRAERNEEDRKSWASPMFTEDDGTFTS
HERAGSDPSSITGLKSQTAAHPSLAYVYESSDSDADRPDPDVVLDDLASRRFHSPSPVAP
TNFAIPMSQLESAAVPCTTRSQVAVSNVPRQTLTHLSSQSQAYRRPASAGVCIYDDSEEE
DDEFGYADPVQDDLYSRKVGLTPQPSATVPFDKFLPKFWTPEEDAHVKKIKLGSQRRPWY
RKIQGFSHKKSGSSSEESDGDVNPWLSVPTFSRTQSEPPPSHSHAPEGLAQSSLTSTLSS
QTQPLTVAQQRAGLHNLKPPDFWPRPDPASGPRLIKCEKRPLLGREHPNDPYNVSDDILP
DLENDDMFTRRTKTFHSSDDLAKLKYGNFLVPRRKSEADVMVVIQPRREGEPIYPDIEKD
DVVFRRAQQQISHRPLSGAPDNYHPVPIPEAWALPPKLQAKLMSDPIEPRQHKPKPEIKH
GTEQHLKTDDMLLRKLRTLNTQGKEESGAPSVSLSCSEEDMQKWQAIREASRVRYRKRLM
VERILQKSSDSEGSKSVSDITDGELNLSHMSMEVRIEEMQKMRARLKENEEKWQDDLTRW
KNKRKSVNSDIVKKKEEREQIEQITSNSSSRKSKTFKEMQDERESQKHSNYRDSFNSISD
DVFEEPVPQRRTLPARSYTVDTPYAPKDKPSVPSIPSLREKEPAAATLASDQTDLSTKRD
RSSPEIPLKMNNNIEKSQTTTRNLLDDPVPSFSYSNTSLIKPSSAIKPTSISKASSSELI
SNTKPVENSSGPISSLYNPNSMDTKQSRLDQVSASLPRSYQKPDSARLTSVVTPRPFGTQ
SNRIASLPRAFTVDDSLKRTNGETDSLKKTAVSNRYAQYMRDENMSQESPEQSTDEEEEE
EKSSSPVPLVSRVSSLPKSPSLLIPSNEVDYSQMRISLNQKPNSSRDFGFQSDWDSTGAR
VKSVAPGSVAELGQVKVGDEILAVNGHRVADMSYTEWKNSMEDALQQGSLLMDIRRHGKN
NWGRDLPSLPFKSHKTINLTSLDPLGPSEPYLSTNLDFTSHQTKDTVVKTLNVSSQPGNN
YGLNGINGGFHEDSGAVNNKESESITMKNLKRRSEFFEQGLTVSSLVYLCGGLDTPISNM
PVPSITASTTRWSWDPEEERRRHEKWQKEQERLLQEKYKKDQEKLDEEWKKAQQEVQKES
FKKHEEEMLRLEEERRKREEQERLEEQKRKREEEERKRREEERLRLEEERKKREEQQRLE
EEKKKREEEERKKREQERLRLEEERRKREEQERLEEQRRKREEEERLLQEKERNRREEEK
RRLEEQKRFQEQDKVDSFGYTNVYPQLSYSHRSISKSTPELDETAKPDIKGVYGRHKGLA
GWLLEEELRRKKNPQIQKKQAASELELERRSILNAMKYREPERASGGLGEYSRDYKKEPL
SQAELERQQILQEMKKKTSLNTDKSWIRQQSSASVTAKEPADLPIRRGESLDNLDMPRSS
WRSSLSTSNSTLSIPDYSRPHSSFSGFSSYQGGRPGSATLQSSQSMSSLRPSWSPSAASP
EPEPHAPPRNRSVSGRKICSLCNTPLGKGAAMIIESLGLCYHLSCFKCYNCRFDLGGSEA
GAEVRIRNQQLYCNSCYVRLKTGQPTSM
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgaccgcagtctgaagtgggttatgaggctgcttactcagaagcacaaaga
tggattgaggcagtcactgagaagaagtttgggagcagtaatttccggagttctctggag
aatggacttctgttgtgtgatctgatcaacaagatcaggcctggcgtcgtcaagaaacta
aacagattatccacacctattgctggcctggacaacatcagcctcttcttgaaagcctgt
gcaaagcttggactaaaagaggcccagcttttccacccaggagacctgcaagacttatct
acacgtgtgactgtcaagcaccaggagagcagcaggaggctcaaaaatgttctgatcacc
atatattggttgggcagaaaggcatatgctgatcctttttataatggaccttacctaaaa
ctaaaggcttttgagggattacttggcacagcactatataaggcactagaggattccaca
tcactgcggggcagtgtgcgaaacagctcttgtagagatagctggtactcagagaaagaa
gagctcttcccactacgggccggacacaggagagaagactctctagacagcctcgactca
ctgggctccagaacttacagcacatcctcagacgctacactcaaaggcagcagcgagggt
tgtggcagtgaccctgaagccgatctaagcttcatgatgtcagaaaataaagaataccgc
cgttcactggtcatagcacctaagaccaccactcagttcaatcagttcctgccaacaaag
gacaagcagacaggctacgttccagcaccattacgcaagaaacgcgcagagcgaaatgaa
gaggacagaaaaagctgggccagccctatgttcacagaagatgatggcacttttacaagt
catgagagggcaggttcagacccttcatctatcaccgggttgaaatcccagacagctgct
catccgtctttggcctatgtgtatgagagcagcgattcagatgcagaccgaccggatcct
gacgtggttctggatgaccttgctagccgtagatttcacagcccctctcctgtcgctccg
accaactttgccatacccatgagccagctggagtcagctgctgtcccgtgtaccaccagg
tcacaggtggctgtcagtaacgtgccccggcagacactgacccatctcagcagtcagtca
caggcttacaggagacctgcatccgctggtgtctgcatttatgatgactctgaagaagag
gatgacgagtttggctatgctgatcctgttcaagatgatctttactcccgtaaagtaggc
ttgacgcctcaaccgtctgcaacagtgccttttgataaatttctgcccaagttctggaca
cctgaggaggatgcacacgtgaagaagatcaaactgggctcccagcgccggccttggtac
aggaagatccaaggtttcagccacaagaagtcaggttcatcctctgaagaatcagacggt
gacgtcaacccctggctctctgtgcctactttctctcgcactcagtctgaaccccctccc
tctcactcccatgcacctgaaggcctcgctcagtccagcctcacttccacactcagttct
caaacacagcccctcacggttgctcagcagagagctgggttgcataacttaaagccccct
gatttctggcccagaccggatcccgcctcgggccccagactcataaaatgtgaaaagcgt
cccctccttgggcgtgagcaccctaacgacccttacaacgtttctgacgacatcctgcct
gatttggaaaatgacgatatgtttacacgtcgtactaaaaccttccactcaagtgatgac
ctggccaagttgaagtatggcaacttcctggtgcctcgccgcaaatcggaggccgacgtc
atggtggtaattcagccccgccgtgagggcgaacccatttatcctgacattgaaaaagat
gatgtggtttttcgaagggctcaacagcaaatcagtcatcgccctctgtctggggcccct
gataactaccatcctgttcctattccagaagcatgggctttgccaccaaaactgcaggcc
aagctgatgtctgacccaattgaacccagacagcataaacccaagccagagattaaacac
ggaacagagcagcacctgaaaacagatgatatgctacttaggaagctaagaactttaaat
acccaaggaaaagaggaaagcggagctcccagtgtttctttgtcttgcagcgaggaagat
atgcagaaatggcaagccatcagagaggccagccgtgtgcgatacaggaagaggctcatg
gtggagagaatcctccagaaaagctctgatagtgaagggagcaaatcagtgagcgacatc
actgatggtgagttgaacctcagccacatgtcgatggaggtgcgcattgaagagatgcag
aagatgcgtgctcggttgaaggagaatgaggagaagtggcaagatgatcttacaaggtgg
aagaataagcgcaagagtgtgaattctgacattgtgaagaagaaagaggagagggaacag
atcgagcagatcacttcaaacagcagcagcaggaaatcaaagaccttcaaggaaatgcag
gatgagagagagagccaaaagcacagtaactacagggacagctttaactccatctctgat
gatgtctttgaagaacctgtaccccaaaggagaactctgccagcacgcagctacaccgtt
gacaccccttacgcccccaaggacaaaccttcagtaccctccataccatctctgagagaa
aaggaacctgccgctgccactctggcatcagatcagacagatttatctaccaaacgtgat
cgctccagcccggagatcccactcaaaatgaataacaacattgagaagagccagacgacg
acccgaaaccttctggacgatccagttccctcgttctcctacagcaacaccagcctgatt
aagccctccagcgcgatcaagcccaccagcatcagtaaagccagcagctcggagttgatt
agcaacactaagccagtggagaactccagcggccccattagctctttgtataatcccaat
tcaatggatacaaagcagtctaggctggatcaagtttctgcctccctccccaggagctac
cagaaaccagatagcgcaagactcacctctgtagtcacgcccagaccattcggcacacag
tccaaccgaatcgcttcgcttcccagagcgttcacggtggatgactctcttaagcgtaca
aatggggagaccgacagcctcaagaagacagcagtttccaaccgctatgctcaatatatg
agagatgaaaatatgtcccaggaaagtcctgagcaaagcactgatgaagaggaggaagag
gagaaaagctcatctcctgtcccactggttagcagggtgtcctccctgcccaaatctcca
tccctgctcatcccttccaatgaggtggactacagtcagatgaggatcagcctgaaccag
aaacccaacagtagccgggattttggcttccagagtgactgggactccacgggcgcccgt
gtcaaatctgtagcgccaggcagcgtagcagagcttggtcaagtgaaggttggagatgag
atccttgcagtgaacggccacagggtggcagacatgagctatactgagtggaagaacagt
atggaggatgccttgcagcagggtagtctccttatggacatccgtagacatggcaagaat
aactggggcagagacctaccttcccttccatttaaaagccataagaccatcaatctgacc
agtctggatcctctaggtccctctgagccatacctcagcaccaacctggatttcacatct
catcaaaccaaggatacggtcgtgaaaactttgaacgtcagctcacagcccggcaataat
tatggtttgaatgggataaatggtggtttccatgaggattcaggggctgtgaataataaa
gaatctgaatccattactatgaaaaacttaaaaaggagatcagagttttttgaacaaggg
ctcacagtcagttctctggtctacctctgtggtggattggatacaccaatatcaaatatg
cccgttccctccatcactgcatccactacacgctggtcctgggacccagaagaagagcgc
agacgacatgagaaatggcagaaagagcaggagcgtttgctgcaggagaagtacaaaaag
gatcaagaaaaacttgatgaggagtggaaaaaggcccagcaagaagttcagaaagagagt
ttcaaaaaacatgaggaggagatgctgcgtttagaggaagagaggagaaaaagagaggaa
caagagcgccttgaggaacagaagagaaagagagaagaagaagagaggaaaagaagagaa
gaggagaggctgcgtttagaggaagagaggaaaaagcgagaggaacaacagcgccttgag
gaagagaagaagaagagggaagaagaagagaggaaaaaaagagaacaggaaaggctgcgt
ttagaggaagagaggaggaagagggaggaacaagagcgcctggaggaacagaggaggaag
agagaagaggaagagcgcctccttcaggaaaaagagaggaatagaagagaggaggagaag
aggcgactagaagagcagaagaggtttcaggagcaagataaggtggactcctttggctat
accaatgtttaccctcaattatcctactcacacagatccatttctaaatctactccagaa
cttgatgagactgcaaaaccagatattaaaggtgtgtacggcagacacaagggtttggca
ggatggctgttggaagaggaactgaggcgaaagaaaaaccctcagatccagaaaaagcag
gcagcgagtgagctagagcttgagaggaggagcatcctcaatgccatgaaatacagagaa
ccagagagagcgagcggtggtctgggtgagtacagtagagactataagaaagagcctctg
tctcaggctgagctggaaaggcagcagatccttcaagaaatgaagaagaagacttccttg
aacacagacaagagctggattcgccagcagagctctgctagtgtcactgccaaagaaccg
gctgaccttcccatcaggagaggcgagtctcttgacaacctcgatatgcctcgttcctct
tggagatcatcactgagcacatctaacagcaccttgtccataccagactacagccggcct
cattcgtccttctctggcttctcgtcttaccagggtggacgtccagggtctgcaactctg
cagtcatctcagtccatgagctccctcaggccgtcctggtccccatctgcagcttcacca
gagccagagcctcatgctccaccacggaataggtcagtgagtggcaggaaaatatgttcg
ttgtgtaatacaccactgggcaaaggagcagccatgatcatcgagtccctggggctctgt
tatcatttgagttgtttcaagtgctataactgcaggtttgatttgggaggctcagaagca
ggagcagaagtcagaatacgaaaccaacagctctattgtaactcctgctatgtgcgactc
aaaactggtcaacccacatccatgtga
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integrated database retrieval system
