Labeo rohita (rohu): 127170610
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Entry
127170610 CDS
T09007
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04382
Cornified envelope formation
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127170610 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127170610 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127170610 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127170610 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127170610 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127170610 (col4a2)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127170610 (col4a2)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127170610 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127170610
NCBI-ProteinID:
XP_050974688
LinkDB
All DBs
Position
9:complement(8244438..8340070)
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AA seq
1669 aa
AA seq
DB search
MEGENHLQHWKTLRCFLLCLAVLILTTEVNAGVKKTGGPCGGRDCSGGCQCFPEKGARGL
PGPLGPQGPSGPNGRPGDPGLQGPKGEKGDRGRGGFMGPKGSVGMEGVPGFNGADGVPGH
PGPSGPRGKPGADGCNGTRGDSGTSGQPGFSGGPGISGRPGMKGERGDPLEVWVYMERFR
GDPGHPGLPGFMGPTGDPGYRGQPGFQGPWGPPGSKGVKGKKGESTKILKGVKGELGETG
EPGLPGPYSQTQPAPPEWQGVKGLKGYKGETGDLGYLTTKGETGVSGFPGQRGNQGRNGL
PGLRGNTGLPGFPGSYGRKGDRGEPGELINSFDDTGVGPPGPPGERGPTGRYGSKGVKGQ
PGPAGPPPTEQQTVDMWGPEGPRGPKGAKGEAGEPGNPATQPGPPGPDGLPGFQGPPGAK
TSLEEYFKGAPGPRGRPGSAGKKGPKGDHGLCDCDVKSPPGPPGPPGDAGDIGMAGEWGQ
QGDQGQPGPKGLDGLHGYPGTRGSPGPKGRKGELKAATQKGQPGDPGDSGTSGFPGEQGR
PGLDGKDGEPGFQGPTGEGPVGEPGEKGYPGRTGPPGLIGQKGQPGQVYGATKGVRGLPG
DEGQVGSDGRRGLPGPPGDCSPQGEGQWSIPVDCIGDPGPPGETGQPGLPGLDGFPGVPG
VKGAPGAFGEPGAKGEQGEPGRGGPPGPRGFVGPRGDLGYPGTKGVEGASGLSGKPGLDG
ASGEKGEHGDVLGASSGAPGDFGLPGPRGVIGLPGDPGSQGHPGMEGMPGMIGLKGESGP
PGLQGELGNPGPAGTFGFPGRSGEVGPPGPPGETGEPGPSGKRGDQGDQGLPGPQGVKGF
SGETGNIGLPGNIGPPGDPGHQGPFGIDGFPGIKGSKGGQGMTGFPGMPGERGVKGFSGQ
KGAIGDPGQQGVKGPPGAPGLKGDRGLMGPPGEKPVIHITPHMKEVMKGAKGDHGNMGDP
GFTGPRGTKGLPGVPGTWGRDGHPGDPSDTKGTRGLPGAEGFPGTKGMPGPTGLPGIGGF
PGSSGPRGDKGSSGAYGRTGESGIKGIKGELGPTISLPGSTGLRGETGLPGPLGEKGLTG
HSGDRGSPGFDGIEGMKGYPGEPGKGGAPGSDGLQGFPGTQGQKGWPGVPGQAGTPGIQG
QPGQKGFPGLKGIFGLDGLKGQKGITGVPGFDSVGRPGEPGTKGERGETGIPSIEAGTPG
EVGFKGFVGDPGNKGDPGRPGVPGPRGPQGFSDIKGVQGDIGFPGPKGLSGFPGPRGIPG
DPSPFGAKGENGNPGEFGLTGAKGFQGDAGEKGPSGESGVSGRKGEKGEPGMMGFPGKHG
FEGDRGPVGPKGDTGPPGFPGLPGAKGLPPVPVKLPGERGPPGPMGIQGPQGRNGNPGPA
GPPGDPGFLGPQGEKGMPGLPGIPGNPGFRGDHGQMGHPGLQGEEGSRGGPGLPGPIGMP
GRSVNVGYLLVKHSQSEQIPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFN
TMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEEAEIKPYISRCSVCEAPSVAIAV
HSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAK
GTCHYFANKQSFWLTSIDQTFQSSHSAETLKAGQLLSRISRCQVCMKNL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgagaaccatttacagcactggaagacattaaggtgttttctgttgtgcctt
gcagtccttatccttacgactgaggtcaacgcaggagtgaagaagactggtggaccatgt
gggggtagagactgcagcggagggtgccaatgttttcctgagaagggcgcaaggggattg
cctggcccccttggtccccaggggccctcaggccctaatgggcgaccaggagaccctggt
ctccagggccctaaaggagagaagggagaccgtggcagaggaggctttatgggtccaaaa
ggaagtgtgggaatggaaggtgttccagggtttaatggagcagatggtgttccgggccat
cctgggccgtctgggcctcgtggaaaaccaggagctgacggttgtaatggaactcgggga
gattcaggaacatcaggacagccaggattcagtggcggacctggaatatcaggccggcca
ggaatgaagggggagaggggtgaccctttggaggtgtgggtctatatggaaagattcagg
ggagatccaggacacccaggtttaccaggatttatgggaccaactggtgaccccgggtac
agaggacagccaggatttcaaggtccttggggtcctcctggaagtaaaggtgttaaagga
aaaaagggtgaaagcactaagatattaaaaggagtcaaaggagaactgggggagactgga
gagccgggcctaccaggaccttactcgcaaacccaacctgcccctccagaatggcagggt
gtaaaaggccttaaaggatataaaggtgaaacaggagatttgggatatttaaccaccaaa
ggagagactggtgtgtcaggttttcctggacagcggggaaaccaaggacgaaatggcttg
ccaggacttaggggtaacactggactaccaggtttcccaggaagttatggacgcaaggga
gacagaggagaacccggagagctgataaattcttttgatgatactggagtgggtcctcca
ggacctccaggagagcggggtccaactggaagatatggttctaagggtgtcaaaggacag
ccgggtcccgcaggcccccctcctactgaacaacaaacagtggatatgtggggtccagag
ggaccacggggaccaaagggagccaaaggtgaagctggagaaccaggtaatcctgccact
cagcctgggccacctggccctgatgggcttcctggatttcaaggaccacctggagcaaag
acatcattggaagaatacttcaaaggtgcaccaggaccacgtggacgtccaggaagtgca
gggaaaaagggaccaaagggtgaccatggtctgtgcgattgcgatgtaaaatccccacct
ggtcctccgggtcctcctggagacgctggggacattggcatggcaggcgagtggggtcag
cagggtgatcagggccagccaggacccaaaggcctggatggtctacatggttaccctggt
acaagaggatcacctggacccaaaggcagaaaaggagagctgaaagccgctacacagaaa
ggacaacctggtgacccaggggactcgggtactagtggtttcccaggagagcaaggaagg
cctgggttagatggaaaagatggtgaaccaggttttcagggacctactggagagggtcct
gtaggtgagcctggagagaagggatacccaggtcggacaggtcctccaggtctaataggt
cagaaaggacaacctggtcaggtttacggagcaactaaaggtgtaagaggccttcctgga
gacgaaggacaagttggtagcgatggaagacgagggttacctggtccaccaggagattgc
agtccacaaggagaaggtcagtggagtattccagtggattgtattggagatcctgggcca
cctggagagacagggcagcctggacttccagggcttgatggatttccaggagtcccaggt
gttaaaggtgcaccaggtgcttttggagaacctggagccaaaggagagcaaggtgaacca
ggaagaggaggcccacctgggccaagaggttttgttggacctcgtggtgacttaggatat
cctggcaccaaaggtgtggaaggagcttcaggcctttctggtaaaccaggtttggatggt
gcttcaggggaaaagggtgaacatggtgacgttttaggagcatcttctggagcccctgga
gactttggactgcctggaccgaggggtgtcattggtcttccaggagacccaggatctcaa
ggacacccaggtatggagggaatgccaggtatgattggccttaagggtgaaagtggccct
ccaggtcttcaaggagagttaggaaatcctggaccggctggaacatttggctttcctggg
cggtctggtgaagtaggacctcctggaccacctggagaaaccggagaaccaggtccaagt
ggaaaaaggggagatcagggagaccaaggccttcctgggccccaaggtgtaaagggtttc
agtggagaaacaggaaatattggtctaccaggaaatattgggcccccaggagatccagga
catcagggcccatttggtattgatggttttccagggataaaaggctccaaaggtggtcag
ggcatgacaggtttccctggaatgcctggtgagagaggtgtcaagggcttttcgggacaa
aaaggggcgataggtgatccaggacaacagggtgtaaaaggacctcctggtgctccaggt
ctaaaaggtgacagagggttgatggggcctccaggtgaaaagccagtcatacatatcaca
ccacatatgaaagaggtcatgaagggagctaaaggtgaccatggaaacatgggagatcct
ggcttcactggtcccagaggtacaaaaggtcttccaggtgttccaggaacatggggtaga
gatggacatccaggtgatcccagtgatacaaaaggtactagaggtcttcccggagcagaa
ggattcccaggcactaagggaatgccagggcctactggacttcctgggattggtggattt
cctggaagttctggacccaggggtgacaaaggctcgtctggtgcctatggacggactgga
gaatctggaatcaagggaataaaaggtgaattgggtcctaccatcagtcttcccggatca
acaggactgagaggcgaaactgggctgcctggacctttaggtgagaagggactcacaggt
cattctggagacaggggaagtcctggttttgatggcattgaagggatgaaaggctatcca
ggagaacctggaaaaggtggagcaccaggttctgatggcctacaaggtttcccaggaacc
cagggtcaaaagggctggcctggcgtgcctggacaggcaggaacccctggaatccaaggt
caaccgggacaaaaaggatttcctggtcttaaaggcatttttggactggatggcctgaag
ggtcaaaagggtatcactggtgttccaggttttgacagcgtgggccgtcctggtgagcca
ggaacaaaaggagagagaggagagaccggcatccccagcatagaggctggtacccccgga
gaggtgggattcaagggtttcgttggagatccaggtaataagggtgatcctgggcgtcca
ggtgtaccgggtcctcgtggtccacaaggattctctgatataaaaggggtgcaaggcgac
attggctttccaggcccaaaaggactttcaggttttcctggtcccagagggatcccaggt
gacccatcgccattcggagcaaaaggagaaaacggaaatccaggtgaatttggacttact
ggagcaaaaggattccagggggacgcaggagaaaaaggaccgtcaggagaatctggagtg
tcaggaagaaaaggtgagaaaggagagccaggaatgatgggatttccaggaaaacatggt
tttgaaggcgataggggccctgttggacctaaaggtgatactggacccccaggttttcct
ggcttacctggtgctaaaggacttccaccagttccagtgaaactaccaggcgagagagga
ccacctggcccaatgggtattcaaggaccacaaggacggaatggaaacccaggccctgct
ggacctcctggtgatccagggtttttgggtccacagggtgaaaaaggcatgccaggtcta
cctggaataccaggaaatccaggcttccgtggagatcatggacaaatgggccatcctggt
ctacaaggcgaagaagggtcacgagggggccctggtttacctggtcctattggaatgcct
ggtcgcagtgttaatgttggctacctgctggtgaagcacagtcagtctgagcagatcccc
atgtgccctgtgggcatgtccaagttatgggacggttacagtcttctgtactttgaggga
caggagaaggcccacaaccaagaccttggtctagccggctcatgtctaccccgttttaac
accatgcccttcctgtactgcaatcctggagacgtgtgctactacgccagccgcaatgac
aaatcctactggctgtccaccaccgcaccaattcccatgatgcccgtggaggaggccgaa
ataaaaccgtacatcagccgctgctccgtgtgcgaagctccatctgtggccatcgccgta
cacagtcaagacataacaatcccacaatgcccagcaggctggagaagtctctggattggc
tattccttccttatgcacacggcagctggagatgaaggtggcggtcagtccctggtgtct
ccaggctcctgtctagaagatttccgcaccacacccttcatcgagtgcaacggggccaag
ggtacgtgtcactacttcgccaacaagcaaagtttctggttgacatctatcgatcagacc
ttccagagttcccattccgctgagacactgaaagctgggcagctcctgtcacgcatcagc
cgatgccaagtgtgtatgaaaaacctgtga
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integrated database retrieval system
