Labeo rohita (rohu): 127170610
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Entry
127170610 CDS
T09007
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127170610 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127170610 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127170610 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127170610 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127170610 (col4a2)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127170610 (col4a2)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127170610 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127170610
NCBI-ProteinID:
XP_050974688
LinkDB
All DBs
Position
9:complement(8244438..8340070)
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AA seq
1669 aa
AA seq
DB search
MEGENHLQHWKTLRCFLLCLAVLILTTEVNAGVKKTGGPCGGRDCSGGCQCFPEKGARGL
PGPLGPQGPSGPNGRPGDPGLQGPKGEKGDRGRGGFMGPKGSVGMEGVPGFNGADGVPGH
PGPSGPRGKPGADGCNGTRGDSGTSGQPGFSGGPGISGRPGMKGERGDPLEVWVYMERFR
GDPGHPGLPGFMGPTGDPGYRGQPGFQGPWGPPGSKGVKGKKGESTKILKGVKGELGETG
EPGLPGPYSQTQPAPPEWQGVKGLKGYKGETGDLGYLTTKGETGVSGFPGQRGNQGRNGL
PGLRGNTGLPGFPGSYGRKGDRGEPGELINSFDDTGVGPPGPPGERGPTGRYGSKGVKGQ
PGPAGPPPTEQQTVDMWGPEGPRGPKGAKGEAGEPGNPATQPGPPGPDGLPGFQGPPGAK
TSLEEYFKGAPGPRGRPGSAGKKGPKGDHGLCDCDVKSPPGPPGPPGDAGDIGMAGEWGQ
QGDQGQPGPKGLDGLHGYPGTRGSPGPKGRKGELKAATQKGQPGDPGDSGTSGFPGEQGR
PGLDGKDGEPGFQGPTGEGPVGEPGEKGYPGRTGPPGLIGQKGQPGQVYGATKGVRGLPG
DEGQVGSDGRRGLPGPPGDCSPQGEGQWSIPVDCIGDPGPPGETGQPGLPGLDGFPGVPG
VKGAPGAFGEPGAKGEQGEPGRGGPPGPRGFVGPRGDLGYPGTKGVEGASGLSGKPGLDG
ASGEKGEHGDVLGASSGAPGDFGLPGPRGVIGLPGDPGSQGHPGMEGMPGMIGLKGESGP
PGLQGELGNPGPAGTFGFPGRSGEVGPPGPPGETGEPGPSGKRGDQGDQGLPGPQGVKGF
SGETGNIGLPGNIGPPGDPGHQGPFGIDGFPGIKGSKGGQGMTGFPGMPGERGVKGFSGQ
KGAIGDPGQQGVKGPPGAPGLKGDRGLMGPPGEKPVIHITPHMKEVMKGAKGDHGNMGDP
GFTGPRGTKGLPGVPGTWGRDGHPGDPSDTKGTRGLPGAEGFPGTKGMPGPTGLPGIGGF
PGSSGPRGDKGSSGAYGRTGESGIKGIKGELGPTISLPGSTGLRGETGLPGPLGEKGLTG
HSGDRGSPGFDGIEGMKGYPGEPGKGGAPGSDGLQGFPGTQGQKGWPGVPGQAGTPGIQG
QPGQKGFPGLKGIFGLDGLKGQKGITGVPGFDSVGRPGEPGTKGERGETGIPSIEAGTPG
EVGFKGFVGDPGNKGDPGRPGVPGPRGPQGFSDIKGVQGDIGFPGPKGLSGFPGPRGIPG
DPSPFGAKGENGNPGEFGLTGAKGFQGDAGEKGPSGESGVSGRKGEKGEPGMMGFPGKHG
FEGDRGPVGPKGDTGPPGFPGLPGAKGLPPVPVKLPGERGPPGPMGIQGPQGRNGNPGPA
GPPGDPGFLGPQGEKGMPGLPGIPGNPGFRGDHGQMGHPGLQGEEGSRGGPGLPGPIGMP
GRSVNVGYLLVKHSQSEQIPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFN
TMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEEAEIKPYISRCSVCEAPSVAIAV
HSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAK
GTCHYFANKQSFWLTSIDQTFQSSHSAETLKAGQLLSRISRCQVCMKNL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgagaaccatttacagcactggaagacattaaggtgttttctgttgtgcctt
gcagtccttatccttacgactgaggtcaacgcaggagtgaagaagactggtggaccatgt
gggggtagagactgcagcggagggtgccaatgttttcctgagaagggcgcaaggggattg
cctggcccccttggtccccaggggccctcaggccctaatgggcgaccaggagaccctggt
ctccagggccctaaaggagagaagggagaccgtggcagaggaggctttatgggtccaaaa
ggaagtgtgggaatggaaggtgttccagggtttaatggagcagatggtgttccgggccat
cctgggccgtctgggcctcgtggaaaaccaggagctgacggttgtaatggaactcgggga
gattcaggaacatcaggacagccaggattcagtggcggacctggaatatcaggccggcca
ggaatgaagggggagaggggtgaccctttggaggtgtgggtctatatggaaagattcagg
ggagatccaggacacccaggtttaccaggatttatgggaccaactggtgaccccgggtac
agaggacagccaggatttcaaggtccttggggtcctcctggaagtaaaggtgttaaagga
aaaaagggtgaaagcactaagatattaaaaggagtcaaaggagaactgggggagactgga
gagccgggcctaccaggaccttactcgcaaacccaacctgcccctccagaatggcagggt
gtaaaaggccttaaaggatataaaggtgaaacaggagatttgggatatttaaccaccaaa
ggagagactggtgtgtcaggttttcctggacagcggggaaaccaaggacgaaatggcttg
ccaggacttaggggtaacactggactaccaggtttcccaggaagttatggacgcaaggga
gacagaggagaacccggagagctgataaattcttttgatgatactggagtgggtcctcca
ggacctccaggagagcggggtccaactggaagatatggttctaagggtgtcaaaggacag
ccgggtcccgcaggcccccctcctactgaacaacaaacagtggatatgtggggtccagag
ggaccacggggaccaaagggagccaaaggtgaagctggagaaccaggtaatcctgccact
cagcctgggccacctggccctgatgggcttcctggatttcaaggaccacctggagcaaag
acatcattggaagaatacttcaaaggtgcaccaggaccacgtggacgtccaggaagtgca
gggaaaaagggaccaaagggtgaccatggtctgtgcgattgcgatgtaaaatccccacct
ggtcctccgggtcctcctggagacgctggggacattggcatggcaggcgagtggggtcag
cagggtgatcagggccagccaggacccaaaggcctggatggtctacatggttaccctggt
acaagaggatcacctggacccaaaggcagaaaaggagagctgaaagccgctacacagaaa
ggacaacctggtgacccaggggactcgggtactagtggtttcccaggagagcaaggaagg
cctgggttagatggaaaagatggtgaaccaggttttcagggacctactggagagggtcct
gtaggtgagcctggagagaagggatacccaggtcggacaggtcctccaggtctaataggt
cagaaaggacaacctggtcaggtttacggagcaactaaaggtgtaagaggccttcctgga
gacgaaggacaagttggtagcgatggaagacgagggttacctggtccaccaggagattgc
agtccacaaggagaaggtcagtggagtattccagtggattgtattggagatcctgggcca
cctggagagacagggcagcctggacttccagggcttgatggatttccaggagtcccaggt
gttaaaggtgcaccaggtgcttttggagaacctggagccaaaggagagcaaggtgaacca
ggaagaggaggcccacctgggccaagaggttttgttggacctcgtggtgacttaggatat
cctggcaccaaaggtgtggaaggagcttcaggcctttctggtaaaccaggtttggatggt
gcttcaggggaaaagggtgaacatggtgacgttttaggagcatcttctggagcccctgga
gactttggactgcctggaccgaggggtgtcattggtcttccaggagacccaggatctcaa
ggacacccaggtatggagggaatgccaggtatgattggccttaagggtgaaagtggccct
ccaggtcttcaaggagagttaggaaatcctggaccggctggaacatttggctttcctggg
cggtctggtgaagtaggacctcctggaccacctggagaaaccggagaaccaggtccaagt
ggaaaaaggggagatcagggagaccaaggccttcctgggccccaaggtgtaaagggtttc
agtggagaaacaggaaatattggtctaccaggaaatattgggcccccaggagatccagga
catcagggcccatttggtattgatggttttccagggataaaaggctccaaaggtggtcag
ggcatgacaggtttccctggaatgcctggtgagagaggtgtcaagggcttttcgggacaa
aaaggggcgataggtgatccaggacaacagggtgtaaaaggacctcctggtgctccaggt
ctaaaaggtgacagagggttgatggggcctccaggtgaaaagccagtcatacatatcaca
ccacatatgaaagaggtcatgaagggagctaaaggtgaccatggaaacatgggagatcct
ggcttcactggtcccagaggtacaaaaggtcttccaggtgttccaggaacatggggtaga
gatggacatccaggtgatcccagtgatacaaaaggtactagaggtcttcccggagcagaa
ggattcccaggcactaagggaatgccagggcctactggacttcctgggattggtggattt
cctggaagttctggacccaggggtgacaaaggctcgtctggtgcctatggacggactgga
gaatctggaatcaagggaataaaaggtgaattgggtcctaccatcagtcttcccggatca
acaggactgagaggcgaaactgggctgcctggacctttaggtgagaagggactcacaggt
cattctggagacaggggaagtcctggttttgatggcattgaagggatgaaaggctatcca
ggagaacctggaaaaggtggagcaccaggttctgatggcctacaaggtttcccaggaacc
cagggtcaaaagggctggcctggcgtgcctggacaggcaggaacccctggaatccaaggt
caaccgggacaaaaaggatttcctggtcttaaaggcatttttggactggatggcctgaag
ggtcaaaagggtatcactggtgttccaggttttgacagcgtgggccgtcctggtgagcca
ggaacaaaaggagagagaggagagaccggcatccccagcatagaggctggtacccccgga
gaggtgggattcaagggtttcgttggagatccaggtaataagggtgatcctgggcgtcca
ggtgtaccgggtcctcgtggtccacaaggattctctgatataaaaggggtgcaaggcgac
attggctttccaggcccaaaaggactttcaggttttcctggtcccagagggatcccaggt
gacccatcgccattcggagcaaaaggagaaaacggaaatccaggtgaatttggacttact
ggagcaaaaggattccagggggacgcaggagaaaaaggaccgtcaggagaatctggagtg
tcaggaagaaaaggtgagaaaggagagccaggaatgatgggatttccaggaaaacatggt
tttgaaggcgataggggccctgttggacctaaaggtgatactggacccccaggttttcct
ggcttacctggtgctaaaggacttccaccagttccagtgaaactaccaggcgagagagga
ccacctggcccaatgggtattcaaggaccacaaggacggaatggaaacccaggccctgct
ggacctcctggtgatccagggtttttgggtccacagggtgaaaaaggcatgccaggtcta
cctggaataccaggaaatccaggcttccgtggagatcatggacaaatgggccatcctggt
ctacaaggcgaagaagggtcacgagggggccctggtttacctggtcctattggaatgcct
ggtcgcagtgttaatgttggctacctgctggtgaagcacagtcagtctgagcagatcccc
atgtgccctgtgggcatgtccaagttatgggacggttacagtcttctgtactttgaggga
caggagaaggcccacaaccaagaccttggtctagccggctcatgtctaccccgttttaac
accatgcccttcctgtactgcaatcctggagacgtgtgctactacgccagccgcaatgac
aaatcctactggctgtccaccaccgcaccaattcccatgatgcccgtggaggaggccgaa
ataaaaccgtacatcagccgctgctccgtgtgcgaagctccatctgtggccatcgccgta
cacagtcaagacataacaatcccacaatgcccagcaggctggagaagtctctggattggc
tattccttccttatgcacacggcagctggagatgaaggtggcggtcagtccctggtgtct
ccaggctcctgtctagaagatttccgcaccacacccttcatcgagtgcaacggggccaag
ggtacgtgtcactacttcgccaacaagcaaagtttctggttgacatctatcgatcagacc
ttccagagttcccattccgctgagacactgaaagctgggcagctcctgtcacgcatcagc
cgatgccaagtgtgtatgaaaaacctgtga
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