KEGG   Labeo rohita (rohu): 127170611
Entry
127170611         CDS       T09007                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04510  Focal adhesion
lroh04512  ECM-receptor interaction
lroh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127170611 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127170611 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127170611 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lroh04147]
    127170611 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:lroh00536]
    127170611 (col4a1)
Exosome [BR:lroh04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   127170611 (col4a1)
Glycosaminoglycan binding proteins [BR:lroh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   127170611 (col4a1)
SSDB
Motif
Pfam: Collagen C4 Cry1Ac_D5
Other DBs
NCBI-GeneID: 127170611
NCBI-ProteinID: XP_050974691
LinkDB
Position
9:8340128..8398870
AA seq 1640 aa
MRLPCVTVFLLTISLSIDKSTAKGGCSGSSCGGCDCSGVKGAKGEIGLPGLMGLVGFPGL
PGPEGPPGPMGPKGDSGEPGTQGLKGNRGPPGVAGFPGRPGIPGLPGLEGAPGPQGIPGC
NGTKGDRGFDGVPGHPGVQGPPGIPGLKGAKGDPGGIIGTPIPQKGDRGLPGQPGSPGLI
GNPGQQGPVGPPGPMGPPGRPGETGQKGEPGDKLTFIGEKGQKGERGLNGPPGPPGRPAE
HEGPGTTSNIAGPRGETGSKGEKGDRGFCAPHQHGIKGEPGPPGPIGKPGKDGQSGEKGD
QGFPGVPGFDGSKGDKGERGPPGFGTGYPGPPGPPGPPGAEGETGYPGERGDPGPPGRFI
PGPPGPPGFPGEIGQKGDKGYDGLSLEGPRGADGQPGPPGLPGPINEDCDIEKGAQGPPG
PPGLQGEIGQKGDQGETCTECTAFGQPGLPGPPGPKGQQGYPGLAGSKGERGVTGPPGPA
GIPGQDGPPGLIGAPGAHGEPGDIFVAPGLKGDKGLPGTTGDRGFPGLDGLPGKDGQPGQ
PGPKGEPAKFGIKGDRGLDGDHGLPGPPGERGPPGFPGIGQPGEPGDKGSAGVPGSPGRP
GLPGAKGEAGKVISLPGPQGAPGPRGETGRPGLQGDRGLPGERGIPGFPGGKGDPGLPGI
GLPGPPGPKGFSGIPGPTGFPGEPGRPGQDGLPGRSGTPGQKGEPGRGLPGPKGATGQPG
LPGFPGEKGNPGMPGVPGTEGHTGPPGLQGIKGNAGPPGARGAVGPPGPPGLGEPGPPGP
MGPPGGPGPLGQIGIKGEKGFQGLPGLDMPGPPGDRGSPGVPGLPGSKGLPGEQGPAGRD
GFPGERGPKGEIGIMGMTGPPGPFGPAGNPGEAGQKGDPGFIGIRGEFGNPGPKGERGEQ
GLQGPPGNMSEVDMEHMKGDKGDVGDRGDPGPTGEQGFPGTPGDPGMPGKDGMPGSPGQP
GEKGDTGVPGEPGRTGEPGDPGPRGDMGYPGSMGPKGIKGVGGSPGHPGFKGTDGPKGDK
GDPGAAGIGIPGPPGEKGNVGAPGFPGEPGLKGQKGTMGIPGTPGSQGPKGDTGLIGYPG
SPGKPGEKGVSGLPGSPGEPGFQGRPGEPGLQGPPGQPGEKGESGVDGIPGFIGERGEPG
IPGKGLPGTRGEPGSKGDKGNPGLPGIPGSPGIPGTKGEKGPPGFPGDQGQPGERGLQGE
SMEGPKGDSGPQGEPGEQGATGYPGPPGIPGSAGAKGEKGNAGFPGPQGSQGFKGDKGLI
GAPGEPGLPGYNGPKGEMGPQGVPGFPGTKGEKGVLGPKGDGGDRGFPGLKGSEGPPGPP
GPHTFIKGDPGFPGPQGPPGLVGMQGFPGAKGQQGLMGPQGIKGSDGTPGYNGHPGAKGE
PGQTGPSGPRGYPGPPGPSGIPGHIGPPGPSSMDHGFLVTRHSQSVDVPLCPEGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIQIPPCPQGWASLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFTKPVPTT
LKAGNLRTHISRCQVCMKRV
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgcggcttccatgtgtcaccgtttttcttctcacaatctctttgagcatagacaagagc
acagctaagggtggatgctcagggtcttcatgtggtggttgtgactgcagtggtgttaaa
ggggcgaagggtgagattgggctccctggtttgatgggcctcgtcggatttcctggattg
ccagggcctgagggccccccagggccaatgggaccaaagggagattcaggggagccagga
actcaaggacttaaaggaaacagaggaccacccggtgtggctggtttcccaggacgtcca
ggtattccaggtcttccaggtctagaaggtgcaccaggacctcaaggaatcccaggctgc
aatggaacaaagggggatcgtggttttgatggagttccaggtcatccaggagtgcaggga
ccaccgggtattccagggttgaagggagcaaagggagatccaggtggtattattggaaca
cccatcccacaaaaaggagacaggggcttgccaggacaacccggctcaccaggactaata
ggaaatcctggacaacaagggccagttggcccacctggaccaatgggacctcctggaagg
cctggtgaaactggccaaaagggagagccgggtgacaagctgacgtttattggcgagaaa
ggacaaaagggagaacgaggtttaaacggtccccccggtccaccagggagaccagcagaa
catgaaggccctggcacaacatctaatattgctggaccacggggtgaaacaggctctaaa
ggagagaaaggagacaggggtttttgtgcaccacatcaacatggaatcaaaggtgaacca
ggaccaccaggaccaatcgggaaaccagggaaagatggacagagtggagaaaagggggat
cagggcttccctggtgttcctggctttgatggctcaaagggggacaaaggagaaagagga
ccaccaggatttggtactggttatcctggccctcctggtcctcctggcccccctggagca
gaaggagaaacaggttatccaggagagcgtggagatcctggtcccccagggaggtttatt
cctggacctcctggacctcccggcttccctggagagattggccagaagggagataaagga
tatgatggactgtctcttgaaggtccaaggggagctgatggacaacctggtccccctgga
ctaccaggaccaattaatgaagactgtgatattgaaaaaggagctcaaggtcctcccgga
cctcctgggttgcaaggagagataggacagaaaggtgaccagggtgaaacatgcacagag
tgcactgctttcgggcaaccaggtttgcctggtcctccagggccaaagggtcagcaaggt
tatcctggactagcggggagtaaaggagaaaggggtgtgacaggacctcctggacctgct
ggaatcccgggtcaagatggccctccaggtttaataggtgcccctggcgctcatggtgag
cctggtgatatctttgtggctccagggttgaaaggagataagggtttacctggtactact
ggagacaggggattcccaggtcttgatgggctcccaggaaaagatggccagccagggcaa
cctggacccaagggagagcctgctaaatttggtattaagggtgatcgtggcctggatgga
gatcatggtctacctggccctccgggtgagagaggtcccccaggttttccaggcataggt
cagccaggtgaacctggtgataaaggctcagcaggtgtgcctggttcaccaggaaggcca
ggattaccaggagctaaaggggaagctggtaaagtgataagtttacctggacctcagggt
gccccagggcctcgtggagagactggcagacctggtcttcaaggtgacagaggtcttcca
ggtgaacgtggaattccaggattcccaggaggtaaaggtgaccctggactgccaggaatc
ggcctccctgggcccccaggaccaaaaggattctctgggattccaggtcccactgggttt
ccaggagagcctggtcgaccaggtcaggatggcttgcctggtcgttcagggacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaaaggtgccacaggtcagccggga
ttgccaggatttccaggggagaagggtaatcctggaatgccaggggttcctggaactgag
ggacatactgggccacctggactacagggaatcaaaggtaacgctggaccacctggagct
cgtggtgctgtggggccaccaggtcctccagggcttggagaacctggaccacccggacca
atggggccacctggaggccctggacctcttggtcagatcggtataaagggtgagaaaggt
tttcaaggcctacctggtttagacatgcctggccctccaggagacaggggtagccctggt
gtcccaggtctaccaggatctaagggtttgccaggggaacaaggacctgcaggaagagat
ggcttccctggtgaacgtggtccaaaaggagaaattggaatcatggggatgacaggaccc
cctggaccttttggtcctgctggaaaccctggagaagctggacaaaaaggtgaccccggt
tttattggaatcaggggagagtttggtaatccaggtcccaagggtgagagaggagagcag
ggtctacaggggccacctggaaacatgagtgaagttgacatggagcacatgaaaggggat
aagggagacgtcggagacagaggggatcctggtcctactggagaacaggggtttcctgga
acacctggagaccctggaatgccaggaaaagatggaatgccaggttcacctggacagcca
ggcgaaaaaggagacactggagttcccggggagccaggacgcactggagaacctggagat
ccaggtccaagaggagacatgggatacccaggttcaatggggccaaaaggtattaaaggt
gttggtgggtcaccgggtcatcctggattcaagggtactgatggccccaaaggagataag
ggagaccctggtgcagcaggaataggaatccccggtccccctggagagaagggaaatgtt
ggcgctcctggtttccctggtgagcctggactgaagggacagaagggtacaatgggcatt
ccaggaactcctggaagtcaaggacctaaaggagacacaggactgattggttacccaggc
agtccagggaaaccaggtgagaaaggtgtcagtggattgccggggtctccaggagaacct
gggtttcaaggacgtccgggtgagcctggtctacagggtccaccaggtcagcctggggag
aaaggcgaatcaggggtagatggcattcctggattcatcggagagagaggagaacctggt
atacctggtaaaggattgccaggtacccgtggagaacctggcagcaaaggtgataaagga
aaccctggtcttcctggcattcccgggagtccaggtattcccggaaccaaaggtgagaag
ggtccgccgggattcccaggggaccaaggacagcctggagagagaggacttcaaggagaa
tccatggaggggcctaaaggggacagcggacctcaaggagagccaggagaacaaggtgcg
actggttatccaggcccacctggcataccaggcagtgctggagctaaaggagaaaaggga
aatgcgggcttccctggcccacaaggctctcaagggtttaaaggagacaaaggtttaatt
ggtgctcctggtgagcctggattgcctggttataatggaccaaagggtgagatgggacca
cagggtgttcctggattccctggtacaaagggtgaaaaaggagtgctcggtcctaagggt
gatggaggtgacagaggattcccaggtcttaaaggtagcgaaggcccccctggaccccct
ggtccacacacatttataaagggagatcctggttttccaggacctcagggtcccccgggt
ctagttggaatgcaaggcttccctggagcgaaaggacaacagggtttgatgggacctcag
ggtataaaaggatccgatgggacacctggctataatggacatcctggggccaaaggagag
cctggtcaaactggaccgtctggccccagaggttacccaggacctccagggcctagtggt
atcccaggtcacatcgggccccctggaccttcctcaatggaccacggcttccttgtaacc
cgccacagtcagagtgttgatgttccactatgtccagagggaactacaccaatctatgat
ggatattcgctgctttatgtgcagggcaacgagaggtcacatggacaagacctaggtaca
gctggtagctgcctaaggaaattcagcccaatgcctttccttttctgcaacatcaacaat
gtatgtaacttcgcttctcgtaatgactattcctactggctcacctctcccgagcccatg
cccatgagcatggcccctattactggtgagagcatcaaacccttcatcagcagatgtgca
gtttgtgaggctcctgctatggtgatagctgtgcacagtcagaccatccagataccaccc
tgccctcagggttgggcttccctctggatcggatactcttttgtcatgcacaccagtgct
ggtgccgagggttccggtcaggctctggcctccccgggttcttgtctggaagagttccgt
tcagctcccttcatcgagtgtcatggtcgcggcacctgcaactactacgctaattcctac
agcttctggttagccaccatagaggacagcgatatgtttacgaaacctgtccctacaacg
ctaaaggctgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggta
tag

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