Labeo rohita (rohu): 127170611
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Entry
127170611 CDS
T09007
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127170611 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127170611 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127170611 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127170611 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127170611 (col4a1)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127170611 (col4a1)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127170611 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Cry1Ac_D5
Motif
Other DBs
NCBI-GeneID:
127170611
NCBI-ProteinID:
XP_050974691
LinkDB
All DBs
Position
9:8340128..8398870
Genome browser
AA seq
1640 aa
AA seq
DB search
MRLPCVTVFLLTISLSIDKSTAKGGCSGSSCGGCDCSGVKGAKGEIGLPGLMGLVGFPGL
PGPEGPPGPMGPKGDSGEPGTQGLKGNRGPPGVAGFPGRPGIPGLPGLEGAPGPQGIPGC
NGTKGDRGFDGVPGHPGVQGPPGIPGLKGAKGDPGGIIGTPIPQKGDRGLPGQPGSPGLI
GNPGQQGPVGPPGPMGPPGRPGETGQKGEPGDKLTFIGEKGQKGERGLNGPPGPPGRPAE
HEGPGTTSNIAGPRGETGSKGEKGDRGFCAPHQHGIKGEPGPPGPIGKPGKDGQSGEKGD
QGFPGVPGFDGSKGDKGERGPPGFGTGYPGPPGPPGPPGAEGETGYPGERGDPGPPGRFI
PGPPGPPGFPGEIGQKGDKGYDGLSLEGPRGADGQPGPPGLPGPINEDCDIEKGAQGPPG
PPGLQGEIGQKGDQGETCTECTAFGQPGLPGPPGPKGQQGYPGLAGSKGERGVTGPPGPA
GIPGQDGPPGLIGAPGAHGEPGDIFVAPGLKGDKGLPGTTGDRGFPGLDGLPGKDGQPGQ
PGPKGEPAKFGIKGDRGLDGDHGLPGPPGERGPPGFPGIGQPGEPGDKGSAGVPGSPGRP
GLPGAKGEAGKVISLPGPQGAPGPRGETGRPGLQGDRGLPGERGIPGFPGGKGDPGLPGI
GLPGPPGPKGFSGIPGPTGFPGEPGRPGQDGLPGRSGTPGQKGEPGRGLPGPKGATGQPG
LPGFPGEKGNPGMPGVPGTEGHTGPPGLQGIKGNAGPPGARGAVGPPGPPGLGEPGPPGP
MGPPGGPGPLGQIGIKGEKGFQGLPGLDMPGPPGDRGSPGVPGLPGSKGLPGEQGPAGRD
GFPGERGPKGEIGIMGMTGPPGPFGPAGNPGEAGQKGDPGFIGIRGEFGNPGPKGERGEQ
GLQGPPGNMSEVDMEHMKGDKGDVGDRGDPGPTGEQGFPGTPGDPGMPGKDGMPGSPGQP
GEKGDTGVPGEPGRTGEPGDPGPRGDMGYPGSMGPKGIKGVGGSPGHPGFKGTDGPKGDK
GDPGAAGIGIPGPPGEKGNVGAPGFPGEPGLKGQKGTMGIPGTPGSQGPKGDTGLIGYPG
SPGKPGEKGVSGLPGSPGEPGFQGRPGEPGLQGPPGQPGEKGESGVDGIPGFIGERGEPG
IPGKGLPGTRGEPGSKGDKGNPGLPGIPGSPGIPGTKGEKGPPGFPGDQGQPGERGLQGE
SMEGPKGDSGPQGEPGEQGATGYPGPPGIPGSAGAKGEKGNAGFPGPQGSQGFKGDKGLI
GAPGEPGLPGYNGPKGEMGPQGVPGFPGTKGEKGVLGPKGDGGDRGFPGLKGSEGPPGPP
GPHTFIKGDPGFPGPQGPPGLVGMQGFPGAKGQQGLMGPQGIKGSDGTPGYNGHPGAKGE
PGQTGPSGPRGYPGPPGPSGIPGHIGPPGPSSMDHGFLVTRHSQSVDVPLCPEGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIQIPPCPQGWASLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFTKPVPTT
LKAGNLRTHISRCQVCMKRV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttccatgtgtcaccgtttttcttctcacaatctctttgagcatagacaagagc
acagctaagggtggatgctcagggtcttcatgtggtggttgtgactgcagtggtgttaaa
ggggcgaagggtgagattgggctccctggtttgatgggcctcgtcggatttcctggattg
ccagggcctgagggccccccagggccaatgggaccaaagggagattcaggggagccagga
actcaaggacttaaaggaaacagaggaccacccggtgtggctggtttcccaggacgtcca
ggtattccaggtcttccaggtctagaaggtgcaccaggacctcaaggaatcccaggctgc
aatggaacaaagggggatcgtggttttgatggagttccaggtcatccaggagtgcaggga
ccaccgggtattccagggttgaagggagcaaagggagatccaggtggtattattggaaca
cccatcccacaaaaaggagacaggggcttgccaggacaacccggctcaccaggactaata
ggaaatcctggacaacaagggccagttggcccacctggaccaatgggacctcctggaagg
cctggtgaaactggccaaaagggagagccgggtgacaagctgacgtttattggcgagaaa
ggacaaaagggagaacgaggtttaaacggtccccccggtccaccagggagaccagcagaa
catgaaggccctggcacaacatctaatattgctggaccacggggtgaaacaggctctaaa
ggagagaaaggagacaggggtttttgtgcaccacatcaacatggaatcaaaggtgaacca
ggaccaccaggaccaatcgggaaaccagggaaagatggacagagtggagaaaagggggat
cagggcttccctggtgttcctggctttgatggctcaaagggggacaaaggagaaagagga
ccaccaggatttggtactggttatcctggccctcctggtcctcctggcccccctggagca
gaaggagaaacaggttatccaggagagcgtggagatcctggtcccccagggaggtttatt
cctggacctcctggacctcccggcttccctggagagattggccagaagggagataaagga
tatgatggactgtctcttgaaggtccaaggggagctgatggacaacctggtccccctgga
ctaccaggaccaattaatgaagactgtgatattgaaaaaggagctcaaggtcctcccgga
cctcctgggttgcaaggagagataggacagaaaggtgaccagggtgaaacatgcacagag
tgcactgctttcgggcaaccaggtttgcctggtcctccagggccaaagggtcagcaaggt
tatcctggactagcggggagtaaaggagaaaggggtgtgacaggacctcctggacctgct
ggaatcccgggtcaagatggccctccaggtttaataggtgcccctggcgctcatggtgag
cctggtgatatctttgtggctccagggttgaaaggagataagggtttacctggtactact
ggagacaggggattcccaggtcttgatgggctcccaggaaaagatggccagccagggcaa
cctggacccaagggagagcctgctaaatttggtattaagggtgatcgtggcctggatgga
gatcatggtctacctggccctccgggtgagagaggtcccccaggttttccaggcataggt
cagccaggtgaacctggtgataaaggctcagcaggtgtgcctggttcaccaggaaggcca
ggattaccaggagctaaaggggaagctggtaaagtgataagtttacctggacctcagggt
gccccagggcctcgtggagagactggcagacctggtcttcaaggtgacagaggtcttcca
ggtgaacgtggaattccaggattcccaggaggtaaaggtgaccctggactgccaggaatc
ggcctccctgggcccccaggaccaaaaggattctctgggattccaggtcccactgggttt
ccaggagagcctggtcgaccaggtcaggatggcttgcctggtcgttcagggacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaaaggtgccacaggtcagccggga
ttgccaggatttccaggggagaagggtaatcctggaatgccaggggttcctggaactgag
ggacatactgggccacctggactacagggaatcaaaggtaacgctggaccacctggagct
cgtggtgctgtggggccaccaggtcctccagggcttggagaacctggaccacccggacca
atggggccacctggaggccctggacctcttggtcagatcggtataaagggtgagaaaggt
tttcaaggcctacctggtttagacatgcctggccctccaggagacaggggtagccctggt
gtcccaggtctaccaggatctaagggtttgccaggggaacaaggacctgcaggaagagat
ggcttccctggtgaacgtggtccaaaaggagaaattggaatcatggggatgacaggaccc
cctggaccttttggtcctgctggaaaccctggagaagctggacaaaaaggtgaccccggt
tttattggaatcaggggagagtttggtaatccaggtcccaagggtgagagaggagagcag
ggtctacaggggccacctggaaacatgagtgaagttgacatggagcacatgaaaggggat
aagggagacgtcggagacagaggggatcctggtcctactggagaacaggggtttcctgga
acacctggagaccctggaatgccaggaaaagatggaatgccaggttcacctggacagcca
ggcgaaaaaggagacactggagttcccggggagccaggacgcactggagaacctggagat
ccaggtccaagaggagacatgggatacccaggttcaatggggccaaaaggtattaaaggt
gttggtgggtcaccgggtcatcctggattcaagggtactgatggccccaaaggagataag
ggagaccctggtgcagcaggaataggaatccccggtccccctggagagaagggaaatgtt
ggcgctcctggtttccctggtgagcctggactgaagggacagaagggtacaatgggcatt
ccaggaactcctggaagtcaaggacctaaaggagacacaggactgattggttacccaggc
agtccagggaaaccaggtgagaaaggtgtcagtggattgccggggtctccaggagaacct
gggtttcaaggacgtccgggtgagcctggtctacagggtccaccaggtcagcctggggag
aaaggcgaatcaggggtagatggcattcctggattcatcggagagagaggagaacctggt
atacctggtaaaggattgccaggtacccgtggagaacctggcagcaaaggtgataaagga
aaccctggtcttcctggcattcccgggagtccaggtattcccggaaccaaaggtgagaag
ggtccgccgggattcccaggggaccaaggacagcctggagagagaggacttcaaggagaa
tccatggaggggcctaaaggggacagcggacctcaaggagagccaggagaacaaggtgcg
actggttatccaggcccacctggcataccaggcagtgctggagctaaaggagaaaaggga
aatgcgggcttccctggcccacaaggctctcaagggtttaaaggagacaaaggtttaatt
ggtgctcctggtgagcctggattgcctggttataatggaccaaagggtgagatgggacca
cagggtgttcctggattccctggtacaaagggtgaaaaaggagtgctcggtcctaagggt
gatggaggtgacagaggattcccaggtcttaaaggtagcgaaggcccccctggaccccct
ggtccacacacatttataaagggagatcctggttttccaggacctcagggtcccccgggt
ctagttggaatgcaaggcttccctggagcgaaaggacaacagggtttgatgggacctcag
ggtataaaaggatccgatgggacacctggctataatggacatcctggggccaaaggagag
cctggtcaaactggaccgtctggccccagaggttacccaggacctccagggcctagtggt
atcccaggtcacatcgggccccctggaccttcctcaatggaccacggcttccttgtaacc
cgccacagtcagagtgttgatgttccactatgtccagagggaactacaccaatctatgat
ggatattcgctgctttatgtgcagggcaacgagaggtcacatggacaagacctaggtaca
gctggtagctgcctaaggaaattcagcccaatgcctttccttttctgcaacatcaacaat
gtatgtaacttcgcttctcgtaatgactattcctactggctcacctctcccgagcccatg
cccatgagcatggcccctattactggtgagagcatcaaacccttcatcagcagatgtgca
gtttgtgaggctcctgctatggtgatagctgtgcacagtcagaccatccagataccaccc
tgccctcagggttgggcttccctctggatcggatactcttttgtcatgcacaccagtgct
ggtgccgagggttccggtcaggctctggcctccccgggttcttgtctggaagagttccgt
tcagctcccttcatcgagtgtcatggtcgcggcacctgcaactactacgctaattcctac
agcttctggttagccaccatagaggacagcgatatgtttacgaaacctgtccctacaacg
ctaaaggctgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggta
tag
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integrated database retrieval system