Labeo rohita (rohu): 127170648
Help
Entry
127170648 CDS
T09007
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03030
DNA replication
lroh03410
Base excision repair
lroh03420
Nucleotide excision repair
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127170648 (rfc1)
03410 Base excision repair
127170648 (rfc1)
03420 Nucleotide excision repair
127170648 (rfc1)
03430 Mismatch repair
127170648 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127170648 (rfc1)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127170648 (rfc1)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
127170648 (rfc1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
127170648 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_7
AAA_5
AAA_33
Rad17
RuvB_N
AAA_16
AAA_17
AAA_14
BRCT_2
nSTAND3
AAA_18
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
127170648
NCBI-ProteinID:
XP_050974745
LinkDB
All DBs
Position
1:34409617..34426176
Genome browser
AA seq
1139 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDEEPKKKQKSKTKVTSPTSDEKPSGKRKKRVIIDSD
SEDEKKKEKKTKKVTKETDAPTVKKHPVTYVSDSDSDDTFMTLKKKKPKENGTAKGKKEP
DSGKAKQAKVSSSKSPTKSPSTISKGGVKSSQPTISPKTGPTPPKQMPTSVMAFFGSSSV
QRSDKKMVASASTKRKAPTQETDESLSDEAIAKELQMDEDMELEKQIHDDEEFARTLAML
DEAPQPKKARVDTVSPSKSSSQATAPDTKPKKDPSPKKSPVKASSKLAQMKRRQEEVEEQ
KKKDKVKISPKKEPISPTSSERAATPKTGSASAGMTKSRNFSTPKSDGEPSKISPTKPEN
TSPEDLEKKRANSSAYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDA
KSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESLGTKIINEDELLELIRTKPGKK
SKYEIAAEAENKSSKTRTPVSKGKPTTPSKKATPQGPSPNKRIPSAGKSKPGSASKSRTL
GASRSEVKKSLSFDQSKSTSPVSHSTPESEGSSLLWVDKYRPRSLKNLIGQQGDQSCANK
LLRWLQNWYKHHSGNTKAPLAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELG
YSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNED
RGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFK
EGLKIPPPALNEVILASNQDIRQILHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFD
VCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSK
TADSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAG
KHSRIIQELASHMSLKTLSSREAINLDYLPYLRSAILEPLQSQGAEGASQSVKLMDDYNI
IKEDVDNMMEISTWGAQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDP
ELIGELDGESQVQEEEEDDGVTADAMIKQKKAKPAKDVKQEKPGASGKGKGRGKGKAMK
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttttttgcatccaccaaacctgcagcccccaaaccttcaaatgga
agcaccagcacggatgaagagccgaagaagaaacagaaatcaaaaaccaaggtcacaagt
cccacatctgatgagaaaccctctggaaaacgaaagaaaagagtcataattgattcagac
tctgaggatgaaaagaaaaaggagaagaagaccaagaaggtcactaaagagactgatgcc
cccacagtgaagaaacacccagtaacttatgtgtctgattctgattcggatgatacgttt
atgactctgaaaaagaagaaaccaaaagaaaatggaacagctaaaggcaaaaaagaacca
gattcaggaaaagcaaaacaagcgaaagtctcatccagtaaatccccgaccaaatcccca
agcacgatctcaaaaggaggggtgaagagctctcagcctaccatctccccaaagactgga
ccaacgccaccaaaacaaatgcccacttctgtaatggccttctttgggagctcaagtgtt
cagaggtcagacaagaaaatggtggccagtgccagcactaaaaggaaggcacccacgcag
gaaactgatgagtcgctcagtgatgaagccattgcgaaagaacttcagatggatgaagac
atggagttggaaaagcagatccatgatgatgaggaatttgcaagaacattagccatgctg
gatgaagctccccaaccgaaaaaggctcgggtggacactgtctccccctccaagagcagc
tctcaggctactgccccagacaccaaacccaaaaaggacccgtcccctaaaaagagtcct
gtaaaggccagctccaaactggctcagatgaaaaggcgacaagaagaagtggaagagcaa
aagaaaaaagacaaggttaagatttctcctaagaaagagccaatctcaccaactagctca
gagcgggcagctacacccaaaacaggaagtgcttctgcaggaatgacaaaatcaaggaat
ttttccacacctaaaagtgacggtgaacccagtaaaatctcaccaacaaaaccagagaat
acaagtcctgaggacctagagaaaaaacgggcaaattcatcagcgtatcgtaactatctg
aacagagaaggaccacgagcactggggtctaaagagataccacagggagcagagaactgc
ctggagggttgtgtgtttgtgttgaccggtgtgttagagtctatggagagggatgatgct
aagtcactaatagagcgatatggcggcaaagtcacaggaaacgtcagccgaaaaaccact
taccttgttctgggacgagacagtggagcctccaagacagagaaggcggagagtttgggc
actaagatcattaatgaagatgagttgttggaactcataagaacaaaaccaggcaagaag
tcaaaatacgagattgcggcagaggcagagaataaatcctctaaaacaaggactccagtc
tctaagggcaaacccactactccatccaagaaggccacaccacaagggcccagccccaac
aagagaatcccttcagcaggaaagtctaagcctggctctgcttctaaatctcgaacactt
ggcgcctctcgttcagaggtcaaaaagagtttgagctttgatcaatccaagagcacatcc
cctgtatcccactctacccctgagagtgagggtagcagcctgttgtgggtggataagtac
cgcccccgtagtctgaagaacctgattgggcagcagggggatcagagttgtgctaacaag
cttctgcgttggttacagaactggtataaacatcacagcggcaacacaaaagcaccatta
gccaaatttggcaagtttgggagtaaagatgacggttctggatttaaggccgcattgctt
tctgggcctcctggtgttgggaagacaactactgctgctctcgtctgtgaggagttgggt
tacagctacgtggagatgaatgcgagctgcacccgcagtaagaacagcttaaaggaagtg
attgcagaatcactcaacaacaccagcattaagaacttctatactggtgcatctcagaca
gtgagcagtaaacatgtcctcataatggacgaggtggacgggatggcgggaaatgaagac
agaggaggaatacaggagatgattggtctgataaaacagtcaaagattcccattatctgc
atgtgtaatgaccgcaatcatcagaagatccgctcgctggccaactactgctacgacctg
cggtttcagagaccccgcgttgagcagatcaagggggctatgatgtctatagctttcaaa
gagggtctgaagatcccacccccagcacttaatgaagtaattctggcgtccaatcaggat
attcggcagatactgcataatttgagcatgtggtctgctaaagacaaagtcatgacctat
gaccaggccaaagctgatgctaacaatgctaagaaggacatgaaactgggtccatttgat
gtgtgtcggaaggtgtttgcttcaggagaggaaaccgcccacatgtctttgattgacaaa
tcagaccttttcttccatgattactctttagcaccactgtttgttcaagaaaactacctg
catgtccgtccagctgctgcagggggaaacctgaagaatcatttggtgttgttgagtaaa
acagcagacagcatttgcgatggagatttagtggacaaacaaatccgctccagacagaca
tggtctcttcttcccacacaggcgatttatgcaagcgtgttgccgggggaactgatgcgg
gggtatatgagtcagtttccgacctttcccagctggttgggcaagttctcatcagctggc
aaacacagccgcatcatacaggagcttgcttcacacatgagcctaaaaacgttaagtagc
agggaagcaataaatctggattacctgccgtatttgcgctcagcaatattagagcctctt
cagtcgcaaggtgcagagggagccagtcagagcgtgaagctcatggatgattacaacatc
atcaaagaggatgttgataacatgatggagatcagcacatggggtgcacagccagatcct
tactctaaactagactccaaggtgaaagctgcatttacaagagcctacaataaggaatcc
catcttacgccatactccttacaagtggttaagaaaagccgtaaaggtgctgttgaccct
gagcttataggagagcttgatggtgaatcccaggtccaggaagaggaagaagatgatggg
gttaccgcagatgcaatgatcaagcagaagaaagctaaaccagcaaaagacgtcaaacaa
gagaaaccaggggcttctgggaaggggaaaggcagaggtaaaggaaaggccatgaagtga
DBGET
integrated database retrieval system
