Labeo rohita (rohu): 127170688
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Entry
127170688 CDS
T09007
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127170688 (sox1a)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127170688 (sox1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127170688
NCBI-ProteinID:
XP_050974814
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All DBs
Position
9:14620035..14623218
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AA seq
336 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGGSAGAGYAHMNGWANGTYSGQVAAAAA
AAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASP
SGYGGISYTQHQNSSVASSAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLP
TGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggaccttcattccccgggaccccaaaccaacacgaat
ccggggcaaacgggtccaaactcggggagcaaagccaaccaagaccgcgtaaagagaccc
atgaacgcttttatggtctggtcccggggccagcgccggaaaatggctcaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggtgctgagtggaaggtgatgtcagag
gctgaaaagcggccctttattgacgaggcgaagcggttgcgagccatgcacatgaaggag
catccggattacaaatacagaccgaggcgcaaaaccaagaccctgcttaaaaaggacaag
tactcgttggctggcggcttgctcggcggtgcgggtggtggggtcgggatgagtcctgca
ggggtcggccagaggttggagagtcctgggggtcacggaggctcggccggcgctggctac
gcgcacatgaacggctgggcgaacggcacctactccggccaggtggccgcggcggcggca
gcggctgcgatgatgcaggaggcgcagctcgcttacagccagcacccaggcagtggctcc
caccatcaccacgctcatcaccatcacccgcacaacccgcagcccatgcaccgctacgac
atgactgctcttcagtacagccccatctcgaactcccagagctacatgagcgcttctccg
tccggctacggtgggatttcgtacacgcagcatcaaaactccagcgtcgcatcttctgcc
gccatcggtacgctgagctcgctcgtcaagtccgaacccaatataagccctccggttacc
acgcactcccgaggcccctgccccggagacttgagagagatgattagcatgtatttaccg
accggcgagtccggggatccgtctgtgcagagcagactgcatgccttaccgcagcactat
cagagcacaactgccggagtaaacggaactgtccccttgacgcatatttga
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