Labeo rohita (rohu): 127171260
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Entry
127171260 CDS
T09007
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127171260 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127171260 (mid1)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127171260 (mid1)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127171260 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
PRY
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
127171260
NCBI-ProteinID:
XP_050975740
LinkDB
All DBs
Position
9:complement(35502054..35587637)
Genome browser
AA seq
680 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTSFDESSKPYSAFQCPTC
RYVITLDQQGLEGLKRNVTLQNIIDRFQKASLSGPNSPTETRRCNPPRNREPFPSAVDDG
TAMSSPCEAVQCQFCEQDPPQEAVKTCVTCEVSYCQECLRATHPNKKPFTGHRLTEPVPD
SRLRGLACPEHGEEKVNMYCVTDEQLICSLCKLVGHHREHQVAALGERYDKLKQMLDSNL
SNLIKRNSELENLMAKLIQTCQHVEHNAAHQESKLAEECDTLINIVQQRRQIIGTKIKEG
KVVRLRKLAQQIANCKQFVERSSSLIVQADQALKETDHARFLQTAKSISERVSMATATSQ
VLIPEINLNDTFDAFALDFSREKKMLEGLDYLTAPNAPNIREELCTASHDTISVHWTSED
EFSVVSYELQYTISTGQTNVVSLCNSMDSWMIVPNIKQNHYTVHGLQSGTKYIFLVKAMN
QAGSRSSPPAKLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDEVSSMKSHAQDRFGGTGN
YGVTGNVFIDSGRHYWEVLIGGSTWFAIGIAYKSAPKHGWVGKDSASWVLSRCNTSWAVR
HNSKEFPIEPSPHMRRLGVLLDYDSGSLAFYDAAGTQHLYTFDIAFSQPICPVFSVWNKC
LTVLTGLPIPDHLEISDPHD
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcggagttgacttgcccaatctgtctggagcttttcgaggatcct
ctactgctgccttgcgcccacagcctgtgtttcaactgcgcccatcgcattctcgtgtcc
cactgcacgtcgttcgacgagtccagcaaaccgtactccgcctttcagtgtcccacgtgt
cgctatgtcatcaccctcgaccagcagggtctagaaggcctcaagcgcaacgtcactttg
cagaacatcatcgaccgcttccagaaggcctctctgagcggcccgaactcgccaaccgag
acgcgccgctgcaacccgccgcgcaaccgcgagccgtttccctcggcggtggatgacggc
acggccatgagttcgccgtgcgaggccgtccagtgccagttctgcgagcaggacccgcca
caggaggcggtgaagacctgcgtcacgtgcgaggtttcgtactgccaggaatgcctgcgc
gccactcaccccaacaagaagcccttcacgggacaccggctcacggagcccgtgcctgac
tcacgactcagaggactggcctgtcccgaacacggagaggagaaggtcaacatgtactgc
gtgactgatgagcagctcatctgctcgctctgtaaactggtcgggcatcaccgtgaacat
caggtggcggcgctgggagaacgatacgacaagctgaagcaaatgttggactccaacctc
agcaatctgatcaagaggaacagcgagctggagaacctgatggccaaactcatccagacg
tgtcaacatgtggagcacaatgcggctcatcaggagagcaaactggcagaggagtgcgac
acgctcataaacatcgtacagcagagaagacaaatcatcggcacgaagatcaaagaagga
aaggtggttcgtttgagaaagctagctcagcagatagctaactgtaagcagttcgtggag
agatcgtcctcgctcatcgtacaggccgatcaggctctgaaagagacggatcacgcgcga
ttcctgcagacggcgaagagcatctccgagcgagtgtcgatggcgacggcgacctcacag
gtcctgatcccagagatcaacctgaacgacacgttcgatgcgttcgcgctggacttttcc
agagagaagaagatgctggagggtctggattatctcacggctccgaacgctcccaatatc
cgtgaggagctttgcacggcgtctcacgacaccatctcagtccactggacatcggaggat
gaattcagcgtggtttcatatgagctccagtacaccatctccaccggacagaccaacgtc
gtcagtctgtgtaactcgatggacagctggatgatcgtgcccaacattaagcagaatcac
tacaccgttcacggcctgcagagcggaaccaagtacatcttcctcgtgaaggccatgaat
caggccgggagccgcagcagcccgccggctaaactcaagaccaacagtcagccgtttaag
ctcgacccgaagtcggctcacaggaagctgaaagtgtcacatgacaatcttacggtggag
cgggacgaagtctcgtccatgaagagccacgcgcaggaccgcttcggcggcacgggaaac
tacggcgtgacggggaacgtcttcatcgacagcggacgccactactgggaggttctgatc
ggaggaagcacatggtttgctatcggcatcgcctacaaatcagctcccaagcacgggtgg
gtcggcaaggactctgcctcatgggtattgagccgctgcaacacctcgtgggccgtgcgc
cacaacagcaaagagttccccatcgagccgtctcctcacatgcggcgtctgggcgtcctg
ctcgactacgactcgggctctctggcgttttacgacgcggctggaacgcagcacctgtac
acctttgacatcgccttctcgcagcccatctgtcccgtcttcagcgtgtggaacaagtgc
ttgaccgtcctcacggggctccccatcccggaccacttagagatcagcgacccgcacgac
tga
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