Labeo rohita (rohu): 127171506
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Entry
127171506 CDS
T09007
Symbol
trpc4a
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 4a
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127171506 (trpc4a)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127171506 (trpc4a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank_4
Ank
Ank_3
PKD_channel
YVC1_C
BAR_4
Motif
Other DBs
NCBI-GeneID:
127171506
NCBI-ProteinID:
XP_050976153
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Position
10:10092862..10110223
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AA seq
937 aa
AA seq
DB search
MSQLYFRRTDNFSYRDRIPLRIVRAESELSPLEKAYLCAVEKGDYASVKQALIEAEIYFK
ININCIDPLGRTALLIGIENENLEIIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGGMQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKMLVQKGVSMPQPHQVRCNCME
CVSSSDVDSLRHSRSRLNIYRALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYKDDVNLLEDEGNNDLARLKLAIKYHQKEF
VAQPNCQQLLASRWYDEFSGWRRRHWASKFITCMFIGFLFPFFSLLYLIAPKSHYGLFIR
KPFIKFICHTASYLTFLFLLLLASQHVDRPDNEEQGQKQSPEFTKHGQVLPKQSPEPTTV
EWMILPWVLGFVWAEIKQMWDGGFQDYIHDWWNLMDFVMNSLYLATISLKFVTYFKCSDN
YGSRNSWVMLHPALVGEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLF
IYCLVLLAFANGLNQLYFYYETDGRLIGNKTCKGIRCSDQNNAFTTMFETLQSLFWSIFG
LVALHVTNVEAEHEFTEFVGATMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKF
ARTKLWMSYFEEGGTLPPPFNIIPSPKSAWYLIRWIKAHCFNIKHRKRTETFGSLGMRAA
ENVRTNRQYQEVLRNLVKRYVAAMIRDAKKEEGLTEENFKELKQDISSFRYEVMGMMKGT
KIGVSNSKGSTGASNLYPDNSMKCNSTSAGSQLKGKMRLQSVATSVIQEGGPKANAWKPG
GLSSLADGFISKKTVSNQINRTGPNNPGEIYSVSEEAGESESEEQADGEQRGDEDQNKXT
GKDRLNETSEEDEEMIYMRYMCDEEMNEEKDYEGSRL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctctactttcgcagaacagacaacttctcgtacagggaccggatccctctg
cgaatagttcgagcagagtctgagctgtcgccgctggaaaaggcctacctgtgtgctgtg
gagaaaggcgactacgccagcgtcaaacaagcgctgatagaagccgagatctatttcaaa
atcaacatcaactgcatcgaccctttggggcggactgctctgttgattggcattgagaat
gagaaccttgaaatcatcgagttgctgctcagctttaacgtgtacgtgggggatgcgctt
ttacatgccatacggaaggaagtggtgggggctgtggagctgcttttgaatcataaaaag
cccagcgggggcatgcaggtgcctcctatcctgttggataagcagttctctgattttacc
cctgacataacacccatcatcttggccgctcacaccaacaactatgagatcatcaagatg
ctggttcagaagggtgtgtccatgccccagccccaccaggtgcgctgcaactgcatggaa
tgcgtgtccagctcagatgtggacagcctacgacattcccgatcccgtctcaacatctac
cgcgccctggccagtccctcgctcattgcactctccagcgaagaccccttcctgacagcc
ttccagcttagctgggagctccaagagctcagcaaggtggagaacgaattcaagtccgag
tatgaagaactttcccagcagtgcaagcagttcgccaaagatctgctcgaccaaacacga
agctcaagagagctcgaattgattctgaactacaaggacgatgttaatcttctggaggat
gaaggaaataatgatctcgccaggttgaaactggccatcaagtaccaccagaaagagttt
gtagcacagccaaactgccagcagctgctcgcatctcgctggtacgatgagttctcaggc
tggagacgccgccactgggccagcaagttcatcacctgtatgttcatcggattcctcttc
cctttcttttcgctgctctacctgattgctcccaagagccactacggcctcttcatccgg
aaacccttcatcaagttcatatgccacactgcttcttatttgaccttcctctttctcctg
ctgttggcctcccaacacgtggatcgtccggacaatgaagagcagggtcaaaagcagagt
ccagagtttaccaaacatggtcaagttctccccaagcagagtccagagcccaccactgtc
gaatggatgatcctaccctgggttttaggatttgtatgggctgagatcaaacaaatgtgg
gacggtggctttcaagattacattcacgactggtggaacctcatggactttgtcatgaat
tcgctgtatctggccaccatctcattgaagtttgtcacttactttaagtgctctgacaac
tacgggtctcggaattcatgggtgatgttgcatcccgccttggtgggcgaggccttgttc
gccattgctaacatatttagctccctacgactgatttcactcttcacagccaactcccac
ctgggccctcttcagatctctctcggccgaatgctgctggacatcctcaaattcctcttc
atttactgcctggtgctactcgcatttgcaaatggactcaatcaactgtatttctattat
gaaaccgatggcagactgattggcaacaagacatgcaagggcatccgatgctcagaccag
aacaatgcattcaccaccatgttcgagacattacagtcattgttctggtcaatttttggt
ctcgttgccctgcatgtgaccaatgttgaagccgaacacgagttcaccgaattcgttgga
gccacaatgtttgggacctacaatataatctccctggtggtgcttcttaatatgctcatt
gctatgatgaataattcctaccaacatattgctgaccatgctgacattgagtggaagttt
gccagaactaaactttggatgagctactttgaggagggcggcacgctgcctcctcccttc
aacatcattccaagtccaaaatcagcgtggtacctcatcagatggatcaaggcgcactgc
ttcaatattaaacacagaaaaagaacagagacgtttggatcacttgggatgcgagctgct
gaaaacgtccgcacaaaccggcagtaccaggaggtactcagaaacctggttaaacggtat
gtggcagcaatgattagagatgccaagaaagaagagggattaactgaggagaactttaag
gaacttaaacaggacatctcaagcttccgttatgaagtgatgggaatgatgaagggcact
aagattggtgtgtcgaactcaaaaggaagcacaggagcttcaaacctgtatcctgataac
tctatgaagtgcaattctacttcagctggaagtcaactaaaaggcaaaatgagactgcag
agtgtcgccacttctgtgatccaggagggtggacccaaagccaacgcctggaagcctggc
ggcttaagcagcctagcggatggcttcatctcaaaaaaaactgttagcaatcaaataaac
cgcacagggccaaacaacccaggagagatttactctgtgtcagaagaagctggagaatcc
gagagcgaagaacaggctgatggcgaacagcgaggagacgaggaccaaaataaannaaca
gggaaggacagactgaatgagacttcggaagaggatgaagaaatgatatatatgcgttat
atgtgcgatgaagaaatgaatgaggagaaggactacgaaggaagcagattataa
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