Labeo rohita (rohu): 127171507
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Entry
127171507 CDS
T09007
Symbol
smarcad1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1b isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127171507 (smarcad1b)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127171507 (smarcad1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
HHH_3
CUE
Motif
Other DBs
NCBI-GeneID:
127171507
NCBI-ProteinID:
XP_050976154
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All DBs
Position
10:16045540..16074833
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AA seq
952 aa
AA seq
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MRRKKGAASSNHVDPSAESDTIIPETPETKRPSGSSLSIALSDSDSDIEISGSSLMPVRQ
EEPKKKVLSSEDVISLSDEDEVTVVKIERRPKHSRTARSTSQARQKGSRMVTNSARPSPL
KTSGMAASDSVHERRQRQMSGASQESDSFHRSSKRRASAEDDSEEDGTEPRSKDQERMLR
KLQRKFPHLNKNELRDVLQEHNWLIEDALETLRMFSDLEVQSEDDAPQISTAAKRPRRVA
STRQQTQVVQLPSPPQLKPRRTLDRTKTSQRSAKQTAVTKSIYISSEEECSDSEASLDDV
LLDSDSDQSDETLSKVKSEILSFFQTASVDELTLIAGCSLKKAQKITELRPFKKWKDLDE
TIHRGNGLSTELLAGCREVLKEREVVKGLMSKCEKISVKLTQDVTHVMDKGPGAMSQPQI
LTSTFQLKPYQLIGLNWLALLHQNKLSGILADEMGLGKTIQTISFLAYLYQEGNHGPHLI
TVPASTLDNWVRELKLWCPSFKVLVYYGSADDRKYMRYEILNQTADYNIIVSTYNLAIGN
SSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSL
LNFIMPNMFSSSTSQISKMFSMKSSEEQSSFERDRITHAKLIMKPFILRRVKSEVLKQLP
AKEEQVEFCAMSEKQQELYNALFHKLKNSSNGEKRELTNVMMQLRKMSNHPLLHRQHYTT
EKIKAMSKLMLKEPSHRDADPALIKEDMEVLSDFELHRLCQQYSALQEYQLDTDILMDSG
KLGLLAQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLID
QFNTDQDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTRTVKV
IKLISKDSIEDAMLRIGERKLKLEQDMTATQEGEEDTLPDDMTSLLKASLGL
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaaagaaaggagcagcatcctcaaatcatgtggatccctcggcagagtcagac
actatcattccggagactcctgaaaccaaacgtccatcaggatcatccctctccattgcc
ctttctgactctgactctgatattgagatatcaggcagttccttgatgccagtcaggcaa
gaagagcctaagaaaaaagtgctgtcgtctgaggatgtgatatcactgtctgatgaggac
gaagtaactgtggtgaagattgagagaaggccaaagcacagcagaacagcaagatctacc
tcacaagctcgacagaaaggatcacgcatggtgaccaatagcgcgcgtccctcgcccctg
aagacgtctgggatggcagcgtctgattcggtccacgaaaggagacagcggcagatgtct
ggtgcttcccaggagagcgacagcttccatcgcagcagtaagaggcgggcttctgcggaa
gatgattcagaggaagatgggactgagccgagatctaaagatcaggaacgtatgctgaga
aaacttcaaaggaagtttccccacctaaacaagaatgaactcagggatgtgcttcaggaa
cataactggcttattgaggatgccttggaaacactacgaatgttctctgaccttgaagta
cagtctgaggatgacgcccctcaaatatccactgctgccaaacgtcctagacgggtcgca
agtacccgtcaacaaactcaggttgtccaacttcccagcccaccccaactaaaaccacgc
agaactcttgacaggaccaaaacatctcaaaggagtgcaaagcagacggcagtgaccaaa
agcatatatatcagctcagaagaggagtgcagtgactctgaggcctctttggacgatgta
ttactggactctgactcagaccagtcagatgagactctgtccaaagtcaaatctgagatt
ctcagcttctttcagactgcctctgtggatgagctcaccctcattgcagggtgctctttg
aagaaggctcagaaaatcacagagctgagaccttttaaaaagtggaaggacctggatgaa
accatacacagaggaaacggtctttccactgagctgctggcaggatgtcgagaggttctg
aaggaaagggaggttgttaaaggtctcatgagcaagtgtgaaaagatatcagtgaaactg
acccaagatgtgacccatgtgatggacaagggcccgggcgctatgagccaaccacagatc
ctcactagcacattccagctgaaaccgtaccagctgattggactgaactggctggcttta
ctacatcagaacaaactcagtggaatcctggcagatgagatgggtttggggaagaccatt
cagaccatttcatttctggcctacctttatcaggaagggaatcatgggcctcatctcatc
accgttcctgcttctacacttgataattgggttcgggaactgaaactttggtgccccagt
tttaaagtgctggtatattatgggtctgctgatgatcgcaagtatatgcgctatgagatt
ctgaatcaaactgcggattacaacatcatcgtctccacttacaacctggctattggaaat
agcagtgaccgtagccttttctgcaagctcaagctggagtatgccgtattcgacgaaggc
cacttgctgaagaacatgaactcgctgcgctaccgacacctcatggccatcaacgctaaa
tatcgtctgctgctcactggaaccccgctgcaaaacaacctactggagctcatgtctttg
ctcaacttcatcatgcccaatatgttctccagcagcacttcacagatctccaagatgttc
tccatgaaatcttcagaggagcagagcagcttcgagagggacaggatcacccacgccaag
ctcatcatgaaacccttcatcctcagacgtgtgaagagcgaggtcctaaagcagctgcct
gccaaagaggagcaggttgagttttgtgccatgtccgaaaagcagcaggaactctacaat
gctcttttccacaaactgaagaattccagtaatggggaaaaacgcgagttgaccaatgtg
atgatgcagctgaggaagatgtccaaccatccgctccttcaccgacagcattatactaca
gaaaaaatcaaggctatgagcaaactcatgcttaaggagccgagtcaccgtgacgcagat
cccgctctcatcaaagaggacatggaggtgctctcagactttgagttgcaccgcctctgt
cagcagtattctgcactgcaggaataccaactcgacacagacatactgatggactcgggg
aagctcggcctcctcgcacagctgctgaactccctgaaggagaagggtgatcgagtggtg
ctgtttagccagttcacaatgatgcttgacattttggaagtgttcctgagacaccataag
cacagatacaaccggctggacggttcaacacctatgagtgacaggattgggctgattgac
cagttcaacacagaccaggatatatttgttttcctgctgtccaccagagccggaggactg
ggtattaacttgacttcagccaatgtggttatccttcacgatatcgactgcaacccttac
aatgacaaacaggcagagggacgctgccaccgggtgggacaaaccaggacggtgaaagtg
atcaagctgataagtaaggactccatagaggacgccatgctccgcattggagaaagaaaa
ctcaaactagagcaggacatgaccgccactcaggagggtgaagaggacactttacctgat
gatatgacctcgctgctcaaagcatctcttggactctga
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