Labeo rohita (rohu): 127171514
Help
Entry
127171514 CDS
T09007
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127171514
04091 Lectins [BR:
lroh04091
]
127171514
Proteoglycans [BR:
lroh00535
]
Cell surface proteoglycans
Others
127171514
Lectins [BR:
lroh04091
]
C-Type lectins
Others
127171514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Jag_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
127171514
NCBI-ProteinID:
XP_050976176
LinkDB
All DBs
Position
10:18802687..18819299
Genome browser
AA seq
2393 aa
AA seq
DB search
MWIHISFEQKFLWRMFVLLSLTGGKAFGASFYGDGFVHLKAVELSSQTSFHVRFRTSGPS
GLLFLAAGETDFLWVGMHSGRVQVRIQLGSGERTVRSEKGIPLNDLTWHTVELQHDHDNI
TLTVDKNSITSVRMPGPDFELDVKEGLFVGGVGDLEKSYLSANETPFGFRGCLDEVLFNE
HNLLSSLRPYSGYKMIHEVSLGCSPQFSATVNDSISFFSSKAFMSLPTWDVPQEGVFECE
LHTVYSEGILLYSSAGQGNYFTLEIQKGHLVAIIKIGITKTALRSLMMVNDGAWHILRLY
LSPLNLQFTLGLEMHNSSFGINASSLQFTGPLFLGGVDVGTYTEVRKNGLLSMIGKRTGG
GSFKGCLRNIRVNYQKMGLPKALVTKDISVGCEPQKQFGPSATSPSVITVDSENITDVSS
EMDKRSFLVLKELEVLEGGRAPLESKHIKINLEFRKLGIRQSQIMFRIEEQPVHGQLRLD
VDPVLTENTFSIMDLWHGRVMYVHGGSEDLLDFFMFSIFTNSKKEVPSYLKGNRLHRFNI
SITPVNDAPELSLPEGSLFILLEHSRRRLSTDVLRVIDPDTNSTDLMFSVLGNLNAGSGF
LEIEEHPGRAVTSFTLSDLEQGKVSYVHKGVKNSRMAIRVSDGDKVSNTVVLRIIAVPLE
HKVANNTGVEVTQGEATFIGNKHLAVQVNVPKQAVDIRYDITVLPVYGEIQRLHSSGQWK
QTNTFTQKLLEKERLRYLSTFHGTQQSNITDSFKCKVTVGSITDELMFLIRVRWIRYRIT
RNKVEIDGEHKVTLTAQQFHVVTKGARLSENDLYIRLLTLPRKGHLLLNNKILKKNSTFS
QADITNHKLQYELLERPHDDIRDMFHFQVFSKFARSGIHEFRISIKADIHNIILKNHGLS
LLEGESKVITKAMLFSETPSSRAVHYTVTSSPKHGILKKINLPNSSPSNDSIIEFTNQDI
SEERILYVHDDSETTHDAFTFLASFGSLQNKTRGTEGTFNISIQLVNDQKPIRVVDKVFH
VVRDSQRLLTLEDLCYHDADTDFDDKDLLYTRRKIPMGELVLVNDTTHKLYQFHQRDLEE
KRVLFIHKGVSYGRFVLFISDGKHYTSTLLEVSAHDPFVKVANNTGLLVQKGQMASLEVA
NFSILTNMDVRHDEEVVFKVFLPPSHGTLYCSGIKADTFTQHDLKMGNVVYHHDDSEILE
DFFNFTSKVKGLRLDVSVPVKVYLESHQKPPRVIHNNPIVVEEGKPVKINKEVLQVVHED
NKPSEIVYTVKLGPTYGFLRISMLEEDHYRGSQENPIQSFSQGDINEGHVQYVQTERGYV
NDSFSLDVTNGVLTFHDLVIVVDIIPLHIPLEVSNMTLIEGSSKALTQDIIKVVNRHFHG
LQIFYLITEGPHHGRIEHSRIPGVPIPSFTRAQAEQGFIFYVHDGSETMADNFTVVANNT
DIRKQSLPFVVYVNITPINDEPPIVTVNRILKVWEGSVTEITTEDLSSEDPDSPPESLEF
IITPPRNGHLALKSAPSRPVLNFTQTHINHGQLVFVHSGALSGGFHFQVNDGVNFAPRQI
FSVAAQSLVISLEKNQELRVFPGSLKLITEDELLIITNDFDDIYGNRTITYTVTTLPRFG
SLRWKQDENSTEEISTFTQNMVKERAVLYAQTKPVAWTAADSFTFTASCPPASLQAHTFN
IHISYENTGQEHRSALLTNTGAVVTEGSSVLIDKSKLDASNALGKLDEAERNFYEVWYEI
TSPPHHGTIVVAEKNLTHERPKFSQFNLHKNGIIYVHDDSETTHDNFTFDVWLIPKGKPA
QRPQNADYIVSEIFNITVTPVNDQPPVLKTGSPRLKVVKGDTVTLDPENLYVQDQDTPPE
ELFYTVISKPKNGFLALEGQLNKSVSTFTQADVNHGRVHFVQKGEPSSGVIYFSITDGFH
RPLYKLFSIEVENITISVVNNTGLTLLQGQTTVILTFENLAAVTNERDAPIKYLVTSPPS
HGSVMVMKEPVTHFDQEDLHSGRVFYNMSDLSSPRDCFEFTVFTSESNLTNQVVNITVKP
LIHLGEHVRIPDGIPVKLRKDVLDATELASLSASDPIFEIIEPPKHGKLVKITFDLGGAS
HSVESFSFRDVEQGRVAIEENINFHGIYANTTTAKYNVTVVHPLNDSFVFLLKAANVQPA
MGEFVYLVLPYNPITGKHILTEPTKLPTLNRTTNSMYPPSHIDPSTRPHRTTSKLKPRNR
WGNHTRSRTTVPHVPRTTVDKLNPSPKNTLVRMESLPRPASDPLLIILPLLACLLLIVIL
VVLILVFRHRREKRAHPAMIPDLTGNPGEDILARGPYLGQPERSLTVPSVIVTPLTPSCP
DSPVLQEVHDAALVPAIEQAVSPFLLCTWSPLNPGSAQQCSPATPLKQNQYWV
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgtggattcacatttcctttgagcaaaagtttttgtggcgcatgtttgtgctgctctct
ttgactggtggaaaagctttcggagcttctttctacggagatgggtttgtgcatttgaaa
gcagttgagttgtctagtcagacgtctttccatgtacggtttcgaacctctggacccagc
ggcctactgttcttggcagctggggagacggacttcctctgggtggggatgcattctggc
agagtacaggtacggattcagcttggatccggggaacggactgttcgttctgagaaagga
atccccttgaatgatctgacttggcatacagtagaacttcaacatgatcatgacaacatc
acacttactgtggacaaaaactctataacatctgtaaggatgccaggacctgactttgaa
ctggatgttaaggaaggactctttgttggtggtgttggggatctggaaaaatcctacctc
tcagcaaatgaaactccttttggctttcggggatgtttggacgaggttctcttcaatgag
cataacctcctgtcctctcttaggccttactctggatacaaaatgattcatgaagtgtcg
cttggttgcagcccacagttttcggccactgtcaacgattcgataagtttcttcagttcc
aaagcattcatgtccttaccaacatgggacgtaccccaagagggtgtatttgaatgtgaa
ctgcatacagtatattcagagggcatccttttatacagctctgcagggcagggtaactat
tttaccctggagatccaaaagggtcaccttgttgctatcattaaaataggtataaccaaa
acggcactgcgttccttgatgatggtcaatgatggggcttggcacattttgcgcctctat
ttgtctcctttgaatctgcaatttactttgggattggagatgcacaattctagctttggg
ataaatgccagttcgttacagtttactggacctctgttcctaggtggagtcgatgtcggc
acttacacagaagtccgcaagaatggattgctctcgatgatagggaagcgtacaggagga
ggatcattcaaaggctgtcttagaaatatcagagttaattaccaaaagatgggccttcca
aaagcattagtcaccaaggatatttctgtaggttgtgaaccacaaaaacagtttggacct
agtgccacaagtccatcagttattaccgtggattctgaaaatatcacagatgtctcatct
gagatggacaagagaagcttccttgtactcaaggaacttgaagttcttgaaggtggacgg
gcaccacttgagtctaaacacattaaaattaacctagagttccggaagcttgggatccga
caatcacagattatgtttcgcattgaagagcagccagtccacgggcagctccgactagat
gttgaccctgttctgaccgagaacaccttcagtattatggacctctggcatggaagggtc
atgtatgtccatggaggatccgaggacttacttgacttcttcatgttttccatcttcacc
aacagcaaaaaggaagtgcccagctatctcaaaggcaatcgtctgcacagatttaacatc
agcatcacacctgtcaatgatgctcctgaacttagccttcctgagggcagcctcttcatt
ctgctggagcactcaagacgtcgtttgagcactgatgtcctcagggtcatcgaccctgac
actaactctacagacctgatgttctcagtccttggaaacctgaatgccggttcaggcttt
ctagagatcgaggaacacccgggcagagcagttacctcatttactctaagcgatctagag
cagggtaaagtgagttatgtccacaaaggtgtcaagaactccaggatggctattagggtg
agtgatggggacaaggtaagcaacacagtggtactcaggatcatcgctgttcccctagaa
cacaaggttgccaacaacaccggagtagaggtaacccaaggtgaagcaacctttattggt
aacaaacatcttgctgtgcaagtcaatgttcctaaacaagcagtggacattcgatatgac
atcacagtcctgccagtgtatggtgagatacaaaggctgcattcgagtgggcagtggaag
caaacaaacacatttacgcaaaaactcctggaaaaggagcgtctccgatatctcagcacc
ttccatgggacgcagcaaagtaatatcactgacagtttcaaatgcaaagtcacagtcggc
tcaatcacggacgagttgatgtttttgattagagtacgctggattcgttacagaatcacc
aggaataaggtagagatagatggtgaacacaaagtcacattgacagctcaacaattccat
gttgtcaccaagggtgcaagactttcggaaaatgatctttacattcgcttattgacgtta
ccaaggaaaggacatcttcttctcaataataagattttaaaaaagaactctactttcagc
caagctgacattactaatcacaagttgcaatatgagctcttagaaaggccacatgatgat
ataagggacatgtttcattttcaagtattctcgaaattcgccaggtcagggattcatgag
ttcagaatcagtatcaaagcagatattcataacataattttaaaaaatcatggactttct
ctcttggaaggggagagcaaggtcattaccaaggcaatgctattctcagagacgcccagc
tccagagcagtacactacactgtaaccagcagccctaaacatgggatattaaagaaaata
aacctccctaattcttctcccagtaatgacagcataatagagttcaccaatcaggacatt
tcagaggaacgcattttgtatgtccatgatgatagtgaaaccacccatgatgcatttaca
ttcctagcctcttttggctctctgcaaaataagacccgaggcacagagggtacatttaat
atttccatccagttggttaatgatcagaaacccatccgtgttgtggataaagttttccat
gtggtgcgtgacagtcagcggttgcttacgctggaagatttgtgctaccatgatgctgac
acagactttgatgacaaagatctgctttataccagacgaaagatccccatgggtgagctg
gtcctggtaaatgacaccacacacaagctttatcaattccatcagagggacttagaagag
aagagagtgctgttcattcacaaaggagtgagttatggacgctttgtcctcttcatatct
gatgggaagcactatacatcaacacttcttgaagtatcagcccatgatccatttgttaag
gtggcaaacaacacaggtctcttggtccagaaaggccagatggccagtttagaagttgct
aatttcagtatcttaactaatatggatgtcaggcatgatgaagaagtggtctttaaggtt
tttctaccaccgagccatgggactctttactgcagtggtataaaagcagatactttcaca
caacatgacctgaagatgggtaatgtagtgtatcatcatgatgacagtgaaatactggag
gacttttttaacttcaccagtaaggttaaaggcctgcgtctggatgtaagtgtgccagtt
aaggtgtaccttgagagtcatcagaagcccccaagagtcatccacaataacccaattgtg
gtggaggaaggaaagcctgtaaaaattaacaaggaagttctccaggttgttcatgaggat
aacaaaccttctgagattgtgtatactgtgaaacttggacccacttacggttttctgcgg
atatccatgctagaagaagatcactaccgtggcagtcaggagaatcccatccaaagcttt
tcacagggtgatattaatgaaggtcatgttcagtatgttcaaacagagcgtggatatgtt
aatgactctttctcacttgacgtaaccaatggcgttctaacattccatgatctcgtaatc
gtagtggatattatccccttgcacatcccactcgaggtgtccaatatgaccctgatagag
ggttcttctaaagctctcactcaggacatcatcaaagttgttaacagacactttcatgga
ctccagatcttctatcttataaccgaggggcctcatcatggacgaattgagcactcaagg
atccctggtgttcccattccatctttcacaagggctcaagctgaacagggattcatattc
tatgtccatgatggaagtgagaccatggctgataattttacagtggtggccaataataca
gatatccgaaagcaaagcttgccttttgtagtttatgtcaatataacacccataaatgac
gaacctccaattgtaactgtcaacaggattctcaaggtgtgggaaggttctgtgacagag
ataaccactgaagacctcagttctgaagatccagattctcctcctgagagcctagaattc
atcatcactccaccaaggaatgggcatctagctctaaagagcgccccctccaggcctgtt
ctgaacttcacccaaactcatatcaatcatggccagctagtgtttgtacatagtggtgcc
ttgtcaggaggatttcactttcaagtcaatgatggggtgaactttgctccaaggcaaatc
tttagtgttgcagcccaatctctggtcatcagcttagagaaaaatcaagagctcagagtt
ttcccaggttctttaaagttaattactgaagatgagctgttgataatcacaaatgacttt
gatgatatttatgggaatcgcaccattacatacactgtgaccacgcttccaagatttggc
agcctgaggtggaaacaagatgaaaattccacagaggaaatctcaaccttcacccaaaac
atggtgaaagaacgtgctgtgctgtatgcacagactaaacctgttgcatggaccgctgca
gattccttcaccttcactgcatcatgcccaccagcatctctccaagctcatacctttaat
atccacatctcttatgaaaatactggtcaggagcataggagtgcactcttaacaaacact
ggtgctgttgtcactgagggtagtagtgttctcattgataaatcaaaattggatgcctcc
aacgctttgggaaaattagatgaagcagaacgcaatttctatgaggtctggtacgaaatc
acctctccaccccaccatggtacaattgttgtagctgaaaagaacctgacacatgaaaga
ccaaagttttctcaattcaacctgcataagaatggaataatttacgtacatgacgactca
gaaaccactcatgataactttacttttgacgtgtggctaatccccaaaggaaagcctgct
caacgacctcagaatgcagattatatagtatctgaaatatttaacatcactgtgacgcct
gttaatgaccagcctcctgtgctcaagacaggatccccaagactcaaagtggtcaaaggg
gataccgtgaccttagaccctgagaacctttatgtgcaggaccaagacactccacctgag
gagcttttttatactgtaatcagcaagcccaagaatggcttccttgcattggagggtcag
ctcaataagtctgtcagcaccttcacccaagctgatgtaaatcatggaagggtgcacttt
gtacaaaagggggagccatcatcaggagtcatctacttcagtatcaccgatggattccac
agaccactctacaagctcttcagtatagaggtggagaatatcaccatcagtgtggtcaac
aacacaggactgactctactgcaaggccagaccacagtgattctgacatttgagaacctg
gctgcagtgaccaatgagagagatgcacccattaagtatttagttacaagcccaccaagc
cacgggagtgtcatggttatgaaagaaccagtcacacactttgaccaagaggacctgcat
tctggcagagtattttataacatgagtgacctgtcatccccacgagactgctttgagttc
acggtcttcacatctgagagtaacctgaccaaccaggtggtcaacatcacagtcaagcca
ctcatccaccttggagagcacgtcaggatcccagatggcatcccagtgaagctccgaaag
gatgtcttggatgcaacagaattggcctcccttagtgcaagcgatcctatctttgaaatc
attgagccgccgaaacacggcaagctagtcaaaatcacatttgaccttggaggagcctct
cactcggtggagtccttctcgttcagggatgtggaacaaggcagagtggctattgaggaa
aacatcaacttccatggcatttatgccaacacaacaacggccaagtacaacgtcacagtg
gtccacccacttaatgactcgtttgtcttccttttgaaggcagccaacgtccaacctgcc
atgggcgaatttgtgtatctagtattaccttataatcccattactgggaagcatatactt
acagagccgaccaagttgccgactttgaacagaacaacgaattctatgtaccctccatct
cacatagatccatcaacaagaccacacaggactacttcaaagctgaaacctcgaaaccgc
tgggggaaccacactcgaagcagaaccacggttcctcatgttccccgcaccacggtggac
aagttgaacccctccccaaaaaacactttagtaaggatggagtctttaccgagacctgca
tctgatcccttgctcatcatcttaccacttctggcttgcctcctcctgattgtcattctt
gtggttctcatacttgtcttccggcaccgcagggaaaagcgggctcatccagcaatgata
ccggatctgacggggaaccctggtgaagatattttagccagaggcccatatctgggtcag
cccgagagaagtctcactgttccttcagttatagtaaccccactcactccgagttgccct
gatagtcctgttttacaggaagtacatgatgcagccttggtgccagcaatcgaacaagct
gtgtctccatttctcctttgcacatggagtccactgaaccctggttctgcccagcaatgt
tcaccagcaacaccccttaaacaaaaccagtactgggtttga
DBGET
integrated database retrieval system
