Labeo rohita (rohu): 127171628
Help
Entry
127171628 CDS
T09007
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04142
Lysosome
lroh04144
Endocytosis
lroh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127171628 (cltca)
04142 Lysosome
127171628 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
127171628 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127171628 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127171628 (cltca)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
127171628 (cltca)
Exosome [BR:
lroh04147
]
Exosomal proteins
Proteins found in most exosomes
127171628 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
127171628
NCBI-ProteinID:
XP_050976346
LinkDB
All DBs
Position
10:8314396..8365173
Genome browser
AA seq
1688 aa
AA seq
DB search
MPEVKMSPTLNPPPLLLSEPISNLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVV
IIDMADPNTPIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFW
KWISLNTIALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGIS
AQQNRVVGAMQLYSVDRKVSQPIEGHAAAFGQFKMEGNAEESTLFCFAVRGQAGGKLHII
EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGT
CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIQYITNVLQNPDLALRM
AVRNNLAGAEELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQGVPAQPGQT
SPLLQYFGILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD
PTLALSVYLRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPDQGLQ
FAQMLVQDEEPLADITQIVDVFMEYNLVQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMH
APQVADAILGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWL
VNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQALTELFESFKSFEGL
FYFLGSIVNFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQ
LPLIIVCDRFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKN
LILVVRGQFSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNHPE
RFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRR
DPELWASVLLETNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI
VLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISSELFEEAFAI
FRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKESIDSYIKA
DDPSAYMEVVQVASQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFIN
GPNNAHIQQVGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR
TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER
AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY
DNAIITMMSHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLD
HSRAVSFFSKVKQLPLVKPYLRSVQNHNNKSVNEALNNLFISEEDYQALRTSIDAYDNFD
NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAE
ELLQWFLQEDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMREYLSKVD
KLETSESLRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQPYGYGYTAAPGYPQAPQA
QPGFGYGM
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagtcaagatgtctcctacactaaatcctcctcctctgctcctctctgagccc
atttcaaatcttcaaaatttggggatcaacccagccaacatcgggttcagcaccctgacg
atggagtctgataagttcatctgtatccgggagaaggtcggagaacaggcacaggtggtg
atcatcgacatggcggacccgaacacccccatccgcaggcccatctcggcagatagcgcc
atcatgaaccctgcgagcaaagtcatcgcacttaaagctgccaaaacccttcagatcttt
aacatcgagatgaagagtaagatgaaagcccacaccatgactgatgatgtcactttctgg
aagtggatctctcttaacaccatcgccctggtgaccgataacgctgtctatcattggagc
atggaaggagattcccagccggttaaagtgttcgacagacattccagcctggcaggctgt
caaatcatcaactaccgcaccgatgccaagcagaagtggctgctgctcattggcatttct
gctcagcaaaacagagttgttggtgccatgcagctatactcagtcgacaggaaggtgtca
cagcccattgagggtcacgctgctgcctttggccagttcaaaatggagggaaatgcagaa
gaatccactctcttctgtttcgctgtgcgaggtcaggcaggaggaaagcttcacattatt
gaagtggggacaccaccaaccggcaaccagccgttccctaagaaagctgtggatgtgttc
ttccctccagaagcacagaatgactttcctgttgccatgcagatcagctccaaacaggat
gtcgtatttctcatcactaaatacggttacattcatctgtacgacctggagacgggcacc
tgcatctacatgaacagaatcagcggagagaccatttttgtgacggcaccccacgaagcc
acagctggaatcattggcgtgaacaggaaaggacaggtgttgtcagtgtgtgttgaagag
gagaacatcatccagtacatcaccaatgtactgcagaatccagacttggctttacggatg
gcggtccgaaataatctggcaggagccgaggagctgtttgcccggaagtttaacaacctc
ttcgccgcaggaaactactcagaggcagctaaagtggccgctaatgctccaaaaggtatc
ctgcgcactcctgacaccatccgccggttccagggcgtcccggcccagcccggccagaca
tccccacttctgcagtatttcggaatcctgctggaccagggccagctcaacaagtttgag
tctctggagctgtgcagacccgtcctccagcagggccgcaaacaacttctggagaaatgg
ctgaaggaggacaagcttgaatgttcagaggagttgggtgacttggtgaagtctgtggac
cccactcttgctcttagtgtctacctgagagccaacgtacccaacaaagtcattcagtgt
tttgcagaaaccggccagttccccaagattgtcctgtatgccaaaaaggtgggctacact
ccggactggatcttcctgctgaggaacgtgatgcggatcagtccagatcagggtctgcag
tttgctcagatgctcgttcaggatgaggaaccgctggctgacatcacacagatcgttgat
gtgtttatggagtataacctggtccagcagtgcacgtccttccttttggatgctctgaaa
aacaaccgcccatctgaaggtccactgcagacccgtctgctggagatgaacctgatgcat
gcaccacaggttgcagatgccatcctaggaaaccagatgttcactaactacgatcgtgcc
cacattgcccagctgtgtgagaaggcggggcttctgcagagagctttagagcactacacc
gacctgtacgacatcaaacgagctgtcgtacacacgcacctgctcaacccagagtggctg
gtgaactactttggctctctgtctgtggaggactcattggagtgtctgagagccatgctg
tccgctaacatcaggcagaaccttcagatctgtgtccaggtggcctccaagtatcacgag
caactgacaacccaagccctcactgagcttttcgagtccttcaagagttttgagggtttg
ttctacttccttggctcgattgtgaacttcagccaggacccagaggtgcatttcaaatac
atccaggctgcatgcaagacgggccaaatcaaagaggtggagcggatctgtcgagaaagc
aactgctatgaccctgaacgtgtcaagaactttctcaaggaagctaaactcaccgaccag
ctgcctctcattattgtgtgcgatcgcttcgacttcgtccatgatcttgtactctacctg
taccgaaacagcctgcagaagtacatcgagatctacgtgcaaaaagtgaacccaagccgt
ctgcctgtggtaattggagggctcctggatgttgactgctccgaggatgtcatcaaaaac
ctgatcctggttgtacggggccagttttccaccgacgagctggtggcagaagtggagaag
agaaacagactgaagctgttgttgccatggctggagtctcgtatccacgagggctgtgag
gagccagctacccacaatgccttggccaagatctacatcgacagcaacaaccatccagaa
cgcttcctgcgggaaaacccgtactacgacagtcgtgtggtggggaaatactgcgagaaa
agagaccctcacctggcctgtgtggcctatgagagaggacagtgcgaccaggagctcatc
aatgtgtgcaatgagaactcactgttcaagagtttgtcccgttacctggtgcgccgcaga
gacccagagctctgggccagtgtgcttttggagaccaacccctacagaaggccccttatt
gaccaggtggtgcagacagccctgtcagagactcaggacccagaggaggtgtccgtcaca
gtaaaggccttcatgactgctgacctgcccaatgaactcattgagctgctggaaaagatc
gtcctggacaactcggtctttagtgaacacagaaacctgcagaacctgctcatcctaaca
gccatcaaagcggaccgcacccgtgtcatggaatacatcaaccgtctggacaattacgac
gcccctgacatcgccaacatcgccatcagcagcgaactattcgaggaggccttcgctatc
ttcaggaagtttgatgtcaacacctctgcagtgcaggttctgattgagcacatcggtaat
ctggaccgtgcgtatgagtttgcagagcgctgtaatgaacctgccgtgtggagtcagctg
gctaaggctcagctgcaaaagggtctcgtcaaagagtccattgactcgtacatcaaggct
gatgacccctcggcttacatggaggtggttcaggttgcttcccagagcggtaactgggag
gacttggtgaagtttttgcagatggccagaaagaaggccagagagtcatacgtggagaca
gagctgatcttcgcactggccaaaaccaaccgtctcgctgaactggaggagtttattaat
ggaccaaataatgcacacattcagcaggttggagatcgctgctatgacgagaagatgtac
gaagcggccaaacttctgtacaataacgtctccaacttcggccgcttggcttccaccctg
gtccacttgggcgagtatcaagctgccgtggacggtgcccgaaaggcaaacagcactcgc
acgtggaaggaggtgtgctttgcttgtgttgatggaaaggagttcagactggctcagatg
tgcggccttcacatcgtagttcatgccgatgagctagaagagctcatcaactattaccag
gaccgtggctactttgaggagctgatcaccatgctggaggcggcgctggggttggagcgc
gctcacatgggcatgttcacagagctggccatcctctactcgaaattcaaaccacagaag
atgagggaacacctggaactcttctggtccagagtcaacatcccaaaggtcctgagggcc
gcagaacaggctcacctgtgggcagagcttgttttcctctacgacaagtatgaagaatat
gacaatgccatcattaccatgatgagccatcccacagatgcctggaaagagggacagttc
aaggacatcatcaccaaggtggccaacgtggaactgtactacaaagcaatccagttttat
ctggagttcaagcccttgttactgaacgacctgctcatagttctgtccccaagactggat
cactcacgtgccgtcagcttcttcagcaaggttaagcagcttcctctggtcaagccttat
ctgcggtcagtacaaaaccacaacaacaagtctgtcaatgaagcacttaacaacctcttc
atctcagaggaagactatcaggcactcaggacctctatagatgcatatgataactttgac
aacatctcactggcccagcgtctggagaaacacgagctgatcgaattcaggagaatcgct
gcttacctcttcaagggcaacaaccgatggaagcagagcgtggagctgtgcaagaaagac
aaactctacaaggatgccatgcagtatgcgtctgagtcaaaggacatagagctggctgag
gagctgctgcagtggttccttcaggaggataagaaggagtgtttcgccgcctgcctcttc
acctgctatgatctgctcaggcctgacgtggtcctggagacggcgtggaggcacaacatc
atggactttgccatgccttacttcatccaggtgatgagggaatacctcagcaaggtggac
aagctggagacctcagagtccctgagaaaagaggaggagcaggcgacagagactcaaccc
attgtttatggcacacctcagctcatgctgacagcaggtcccagtgtgcctgttcccccg
cagcaaccttacggctacgggtacacggcagcacctggctacccccaagctcctcaggcc
cagccgggtttcggttacggcatgtaa
DBGET
integrated database retrieval system
