Labeo rohita (rohu): 127171805
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Entry
127171805 CDS
T09007
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127171805 (rc3h2)
04121 Ubiquitin system [BR:
lroh04121
]
127171805 (rc3h2)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127171805 (rc3h2)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127171805 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-CCCH_4
zf-RING_2
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
127171805
NCBI-ProteinID:
XP_050976646
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All DBs
Position
10:complement(18480672..18512346)
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AA seq
1053 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDACSHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDVLPVNCALLQLVGAPVPEGEIVSVGSVEDTRHYEVCRICVEELALYLKPISGGKGVVT
LSQSTLSRPMQRKLVTLVNCQLVEEEGRMRAVRACRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLMHKSHMQSIIDKLQSPESFAKSVQELTIILQRTGDPANLNSLRAPLERLAGI
DHNPDAAAPSWTELESVLLAVKVVVHGLVEFIQNFSKKSNESPQAQPNSKYKTSMCRDLR
QQGGCPRGASCTFAHTQEELEKHRMRNRKASGAVRPFPSVPVVMAKTGTKGGVPGSEVKN
HEKDAPEDTSPTQLIPRGGDHQEDKTLHSSANGLPAVSLEQNPVSQSKSSAIASGLSTED
DCGLLKHGPVLARAHPKIYYSQDQRPYDLSPYHQPAIPPHKSCNARFHRSSNVPESMLPP
SVGPLYPDQHPSIPPADRLGPGPYGPPSTYPSMSHAHGMYTPVYDSRRVWRPPLYPRDGG
RSNSLPPEVFHSTVYQPPLRERFNSLDSPYCSTAEQRAAMHRDAYTRGVPLGYEELYRHK
QEQWVHHHGNMNRPSQSSPVFTVDVCPEVRPTDMVFLEHPEGVGGGRMTCKCHGGEESLA
HYSPWSCSTISPFESEPHHLPTHSCSKQLDGENGGKRWLHMFEPYRRLKEEDPIIPFGEG
PIISKWGAISRASRTGFHTTDPVQATASQGCAGTTSINFRDYSCHIGHSDLRWGPRGSDS
SSHSSFLESDQLAVSGLHVRRNSFSCGSKQGTDLLGKDGTESEPDRDIELELSALDMEDT
ETQDCNSEDSIETQSRSQNSHLSRVFGDPAASSHLENNLPDRMDAHLMKKMAFRKTLSPG
DLSLGKMQMRTCSPRPGDPPRPSPGPEMLLNGN
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcagctcaatggactgagtttctatcctgccccatttgctacaatgag
tttgacgcctgcagccacaagcccatcagtctgggctgctcgcacaccgtctgcaagacc
tgcctgcacaaactgcaccgcaaggcctgtccttttgaccagacggccattagcaccgac
attgatgtgctgcctgtcaactgtgccctcctgcagctggtgggggcgccggttccggag
ggagagattgtgagtgtgggcagtgttgaagacacgagacattatgaagtgtgcaggatc
tgtgtggaggagctggcgctgtatctcaaaccaatcagtggaggaaaaggtgtggtgacc
ctcagtcagagcacgctcagtagacccatgcagaggaagctggtgaccctcgtgaactgc
cagcttgttgaggaggaggggcgtatgcgggcggtccgggcgtgcagatctctgggcgag
cgcacagtcactgaactgatcctgcagcaccagaacccacagcagctctctgccaaccta
tgggccgctgtgcgggcacgcggctgtcagtttctaggacctgccatgcaggaagatgct
ctgaagctggtgctgctggctctggaggacggctcggctctctcgcgcaaggttctggtg
ctgtttgtggtgcagaaactggaagcgcgcttccctcaggcatccaagaccagcatcggt
catgtagttcagctgctgtaccgtgcctcctgctttaaggtgaccaaacgtgatgaagac
tcctcactcatgcagctcaaagaggagtttcgcacttacgaagccctgcgccgcgaacat
gacgctcaaatcgttcacatcgccatggaagcgggactgcgtatctcgccggagcagtgg
tcgtctctgctatacggggatctcatgcacaaatctcacatgcagtcaatcatagacaag
cttcaatccccagaatcctttgcaaagagcgtgcaggagctcacaataatcctgcagaga
acaggagacccagccaacctcaacagcctcagagctcctctcgagcggctagccggcatc
gaccacaaccctgatgcggccgctccatcctggacagagctggagagtgtgttattggct
gtgaaggttgttgtccatgggctggtggaattcatccaaaacttcagtaaaaagagcaat
gaaagccctcaggctcaacccaacagcaagtacaagacgagtatgtgcagggacttacgg
cagcagggcggctgcccgagaggggccagttgcacttttgcccacacgcaggaggagctg
gaaaagcacagaatgaggaataggaaagccagtggggcggtgagacctttcccgtcagtc
ccagtggttatggccaaaaccggcaccaaaggaggagtcccagggtcagaggtgaagaat
cacgagaaagacgctccagaggacacgtctcccactcagctcatcccaagaggaggagac
caccaggaggacaaaacgctgcacagtagtgctaacggactgcctgcagtcagcctagaa
caaaatcctgtcagtcagagcaagtcctctgcgatagcttcgggattgtctacagaggac
gactgcggtctcctcaaacatgggcctgtcctcgcaagagctcatcctaagatttactac
tctcaggaccagagaccatatgacctgtcaccctaccaccaacctgccattcctcctcac
aagtcatgcaacgctcgcttccatcgttccagcaacgtgcccgagtccatgttaccccct
tcagtgggccctctgtacccagatcagcacccgtctattcctcctgcagacagattaggc
cccgggccgtatgggccaccctcgacctacccctctatgtcccacgcacacggcatgtac
accccggtctacgacagcagacgtgtgtggaggccgccactgtatcccagggatggtggg
aggagtaactctctccctccagaggtttttcattccaccgtctaccagccgcccctccgg
gagcgctttaactcgctggacagcccctactgcagcacagcggagcagagagcggcaatg
cacagggacgcgtacacccgtggtgttcctctcggctatgaggaactctatcgccacaaa
caggaacagtgggtacatcaccacggcaacatgaacaggccctcccaatcttcgccggtc
ttcactgtggatgtgtgtccagaggtacggcccaccgatatggtgtttttagagcatcct
gagggtgtaggtggtgggcgtatgacttgtaagtgtcatggtggagaagagagtcttgcc
cactactcgccctggtcgtgcagcaccatcagcccatttgagtcagagccccaccatttg
ccaacccactcctgttctaaacagctggacggggagaatggcggcaaacggtggctgcac
atgttcgagccctacaggcgactgaaagaagaagatcccatcattccttttggagagggg
cccatcatctctaaatggggagccatttcccgtgcatcccgcaccggctttcacacaact
gacccagtccaggccactgcatcgcaggggtgtgccggtaccacttcaatcaacttcaga
gactatagctgtcatattggtcacagtgacctcagatggggcccacgtggttctgattct
tctagtcactccagctttctagaaagcgatcagctggccgtgtcagggctgcatgtaagg
cgtaattccttcagctgcgggtcaaagcagggcacagatctgctgggaaaggatgggaca
gagagtgagcctgacagagacatcgagctggagctgtccgctctggacatggaggacaca
gagacgcaggattgcaactctgaggactccatcgaaacacaaagccgctcccagaacagc
catctctctagagtttttggtgatccagcggcaagttctcacttggaaaacaacctgcct
gacagaatggacgcccaccttatgaagaagatggcattcagaaagaccctctctcctgga
gacctcagtttagggaaaatgcagatgaggacatgctcgcccaggcctggagaccctccg
cgacccagtccaggacctgagatgctgctaaacgggaactga
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