Labeo rohita (rohu): 127171981
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Entry
127171981 CDS
T09007
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127171981 (chd1)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127171981 (chd1)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127171981 (chd1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
127171981 (chd1)
SLIK complex
127171981 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
127171981
NCBI-ProteinID:
XP_050976936
LinkDB
All DBs
Position
10:complement(23722946..23748445)
Genome browser
AA seq
1790 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKEKNDQDNKIDGAAFWKSNPSILTVQRSAMLRKQQLQQQQLQQQSSSNTGSD
EDSSSSDESDDDSKSRSKGSGSDSDSGSGSGSGSSDSSAEEEENSDESVSDYEPSHKVKS
RKPSNKANARNGRNNKAPKKKPPRSSSDDEDDYKKALAGPRRQATVNVSYKEDEELKTDS
DDLVEVCGEDVPPPEEDEFETLERVMEMRMGRKGATGAVTTVYAVEADGDPNANFDPNRQ
PGEVQYLIKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKEQEKKKWLKAASPEDVE
YFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIARK
FQKCIDEYMSRNQCKTIPYRDCKVLKQRPRFMPMKKQPHYIGADGLELRDYQLEGLNWMA
HSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQLWA
PQMNVVVYLGDINSRNMIRTHEWMHPQTKRLKFNVLLTTYEILLKDKSFLGNVSWAFIGV
DEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEE
EHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRN
YKALSKGTKGSKSGFLNIMMELKKCCNHCYLIKSPEDNEFYNRQEGLQHLIRSSGKLILL
DKLLVRLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQALDHFNAE
GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV
TKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPFNKEELSAILKFGA
EELFKELEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMEDEEID
MDTERDDKNWDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQINFNGNEGRRSRNR
RYSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIAR
DAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPERTSGGRRGKVKGPTFRISGVQVNAK
LVISHEEELAPLHKAIPADPEERKRYIIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGS
WEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSR
KRKPRGKKNKAVKPKMDDVTNSLSSAPPSDKSSEEEDEKEEEEKETPPVKTANRRARVPE
RSVKEEEDEEEDEESDEDEPEDKEPEEKDVTEKVVKKEIKKEKKEEGRDSKEREPKEKEI
KSEPEEESPAEKAVEVKTEVREKKADTPVHTPSGGDAIPLSEESEELDQKTFSVCKERMR
PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLREYTNPEQIKQWRKNLWIFV
SKFTEFDARKLHKLYKHAIKKRQENAQAVEQNTSTVNTQSFKHADVERIKESQQDDSSRD
SYSSDRHHSSRYHEHSKDRHTGDSYRKSSDSRKRPYSSFSNGKDHRERERDQYRERGERQ
DSRYYSESKHRKLDEHRSSREHRSESNSKDRTHSEHRFHSEHRPASDYTHHKSSRDYRYH
SDWQMEHRPRSPRDQRSPYDSRSPLGRRSPFEYSSDHRSTPEQVWSGRKT
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggatggacgcagtgaagatgaaagtgtcagcaacagcagtggagagtccagtaattca
gatgatgagtctgggtcaggatcgggttctggctcggggtcgagttcaagcagtagcagt
tctagcagtagccaatcagggagcagtgactcaggaagcggctcagattctggaagccaa
tcagactcagactctgagaaatccaaggaaaagaatgatcaagacaacaaaatcgacgga
gcagcgttttggaagtccaatcccagtatcctgacagtgcaaaggtcagccatgctcagg
aaacaacagcttcagcagcagcagctccagcagcagagttcctcaaacactggttcagac
gaggactcttccagtagtgatgagtcagatgatgattcaaagagcaggagtaaagggtct
ggttcagactctgactcgggctctggttcaggaagtggctcgtctgactcttcagcagag
gaggaagagaacagtgacgagtcagtgtcagactatgagcccagtcacaaagtcaagagc
agaaaaccttcaaacaaggccaatgccaggaatgggaggaataacaaagctcccaaaaag
aagcccccccgttcctcctcagatgacgaggacgattataaaaaagctctagcgggacct
cggcggcaggccacagtcaatgtgagctacaaagaagatgaggaactgaagactgattca
gatgacctggtggaggtgtgtggagaggacgtcccaccaccagaggaggacgagtttgag
acactggagagagttatggaaatgaggatgggcaggaaaggagcaacgggggccgtaacc
acagtgtatgcagtagaggcagatggagacccaaatgctaactttgaccccaacagacag
ccaggagaggtgcaatacttgatcaaatggaagaactggtcccacattcacaacacatgg
gagacagaggagacgcttaaacagcagaatgtgaagggcatgaagaagctggacaacttc
aagaaaaaagagcaggagaagaagaaatggctcaaagctgcctcacctgaggatgtggaa
tatttcaactgtcagcaggagctcatggatgacttgcattcacaatatcagcttgtggaa
agaatcattggacattcaaatcagaagtctgctgcaggttatccagattacctttgtaaa
tggcaagggctgccatactccgagtgcagttgggaagatggtgctcttattgccaggaag
tttcaaaagtgcattgatgaatacatgagtcggaatcagtgcaaaaccattccctacaga
gactgcaaggttttaaaacagaggccacggtttatgcccatgaagaagcagcctcactac
attggtgcagatgggttggagctgcgggactatcagttggagggtctgaactggatggcc
cattcttggtgcaaaggaaacagttgtatcctggcagatgagatgggtctgggcaaaacc
atccagacaatcagcttcctcaattacttgttccatgagcaccagctttacgggcccttc
cttctggtggtgcctctgtctaccctcacatcctggcagagggagatccagctctgggct
cctcagatgaatgttgtggtgtacctgggagacatcaacagcaggaacatgatccggaca
catgaatggatgcatccgcaaaccaaacgactgaagttcaacgttctgcttacgacgtat
gaaattctgctgaaggataagtcatttttaggaaatgtaagctgggcattcattggtgta
gacgaggcccatcggctgaagaacgacgactcgctcctctacaagactatgatcgagttc
aagtccaaccacaggctcctgatcactggcacacccctccagaactcactcaaagagctc
tggtctctactacattttattatgcctgaaaaatttcactcttgggagatgtttgaagag
gaacatggcaaaggcagagattctggctataccagccttcataaggagctggagcccttc
ctgctgcgcagagtgaagaaggatgtggagaaatctctgcctgccaaggtggagcagatt
ctcagggtggagatgagtgctgttcagaaacaatactacaagtggatattgacaagaaac
tataaagccctgagtaaaggcactaaaggaagcaagtcaggcttcctcaacatcatgatg
gagttgaagaaatgctgtaaccactgctacctcattaaatcgcctgaggacaacgagttc
tacaacagacaagaaggcctacagcaccttattcgcagcagtgggaagctgatacttctg
gataaactgctggttcggctgaaggaacgagggcaccgtgtgctcatcttctcccagatg
gttcggatgctggacatcctggctgagtacctgaagtaccggcaattcttattccagaga
ctggacggttccataaagggtgagatgaggaagcaggcattagatcattttaatgcagag
ggctccgaggatttctgcttcctgttgtccacgcgagcgggtggtctgggcattaacctg
gcctctgcagatacagtggtcatttttgactccgactggaaccctcagaatgacctgcag
gcccaggccagagctcataggattggtcagaaaaaacaggtgaatatttaccgtctggtg
acaaagggctcagttgaggaggaaattattgagagagccaagaagaaaatggtgttggac
catcttgtgattcagaggatggacaccacgggaaagaccgtccttcacacgggtgctgct
ccttccagttccactccattcaacaaggaggaactgtcagccatcctgaagtttggtgct
gaagaacttttcaaagagctggagggagaggagcaggagcctcaggagatggatatcgat
gaaatcctaaagagagcagagaccagagagaacgaccctggaccatccactgtaggagaa
gagctcctctcacaatttaaggtggcaaatttctccatgatggaggatgaggaaatcgac
atggacactgagagggatgataaaaactgggatgacattatcccagaggagcagcggagg
agacttgaggaagaggagcgacaaaaagagctagcagagatctatttactgcctcgcatg
aggaaatgtgctaaacagatcaactttaatggaaacgagggcagacgtagccggaacaga
cgatactctggttcagacagcgattctgtctctgacagaaagaggcccaagaaacgagga
agacctcgaactattccaagagagaacattaagggtttcaccgatgctgagatacgcagg
tttatcaaaagttataaaaagttcggtggccctttagaaaggcttgatgctattgctcgt
gatgctgagttggtggataaatcagagcatgatctgcggcgtctggctgagactgtacat
aacggctgtttgaaaacgctaagggagaacccctgtggaccagaaagaacctcaggaggc
aggcgagggaaggtgaaaggacccacctttaggatctcaggggttcaggtcaatgctaag
ctagtgatctctcatgaggaggaactggcaccattacacaaggccattcctgctgaccca
gaggagaggaaaaggtatataatcccatgccactcaaaggcagctcattttgacattgag
tggggtaaagaagacgactccagcctgcttattggaatttatgagtacggatatggcagc
tgggagatgatcaagatggacccagacctcaacctcacacataagctccttccagatgat
cctgacaagaagccacaggccaaacagttgcagacacgagctgactacctcatcaaatta
ctgagcaaagacctcgccaagaaggaagcacagaaacaagccggcacagcaaattcacgc
aagagaaaaccacggggcaagaagaataaagctgtaaaacccaagatggatgacgtgacg
aacagtctgtcctctgcaccgccatcagataagagctctgaagaagaggatgagaaggag
gaagaggaaaaggaaactcctccagttaagacggccaacagaagagcacgtgtgccagag
cggtcggtaaaggaggaggaggacgaggaggaggatgaggaatctgatgaggacgagcct
gaggataaagagcccgaagaaaaggacgtaacggagaaagtggtcaaaaaagagattaag
aaggagaagaaagaagagggtcgggacagcaaggagagggaaccaaaagagaaggagatc
aagtcagagcctgaagaagagtctcctgcagagaaggctgtagaggtgaaaacagaagtg
cgggaaaagaaagccgacactcctgtgcacacgccctcaggaggagatgcaattccactg
tctgaggagtctgaagaattggaccagaaaacctttagtgtgtgtaaggagcgcatgcgg
ccagtgaaggcagcactcaagcagctggatcgtccagagaagggcctgtctgagcgcgag
cagctggagcacacgcgccaatgcctgatcaaaataggagatcacatcactgagtgtctg
agagaatacaccaaccccgaacagatcaaacagtggaggaaaaatctgtggatatttgtt
tcaaaattcacggaatttgatgcaaggaaactgcataaactgtataaacacgccatcaag
aaaagacaagaaaatgctcaggcagtggagcagaacactagcactgtaaatacacaaagc
tttaaacatgcagatgttgagcggataaaggagtcacagcaggacgacagcagcagagac
agctacagctctgacagacaccactcatctcgctaccacgaacacagcaaagatcggcac
acaggcgactcgtacaggaagagctcagattccaggaagagaccctactcctctttcagc
aacggcaaagaccacagagagcgagagagagaccagtacagagaaagaggagagcgacaa
gacagcagatactacagcgagagcaagcacaggaagctggacgagcaccgctccagcaga
gagcaccgatcagaaagcaactccaaggacaggacgcactccgaacaccgattccactct
gagcaccggcccgcctccgactacacgcatcacaaatcgtcccgggactaccgctaccat
tcggactggcagatggagcaccggccgcgctcgccacgagaccagcgctcgccgtacgac
tcgcgctcgccgctcggacgccgctcgcctttcgagtactcgtccgaccacagaagcaca
cccgaacaggtctggagcggccgcaagacataa
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integrated database retrieval system