KEGG   Labeo rohita (rohu): 127171981
Entry
127171981         CDS       T09007                                 
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lroh  Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lroh03021]
    127171981 (chd1)
   03036 Chromosome and associated proteins [BR:lroh03036]
    127171981 (chd1)
Transcription machinery [BR:lroh03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     127171981 (chd1)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     127171981 (chd1)
    SLIK complex
     127171981 (chd1)
SSDB
Motif
Pfam: SNF2-rel_dom HTH_Hrp3 CDH1_2_SANT_HL1 CHD1-like_C Helicase_C Chromo HDA2-3 DEAD CHDCT2
Other DBs
NCBI-GeneID: 127171981
NCBI-ProteinID: XP_050976936
LinkDB
Position
10:complement(23722946..23748445)
AA seq 1790 aa
MDGRSEDESVSNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKEKNDQDNKIDGAAFWKSNPSILTVQRSAMLRKQQLQQQQLQQQSSSNTGSD
EDSSSSDESDDDSKSRSKGSGSDSDSGSGSGSGSSDSSAEEEENSDESVSDYEPSHKVKS
RKPSNKANARNGRNNKAPKKKPPRSSSDDEDDYKKALAGPRRQATVNVSYKEDEELKTDS
DDLVEVCGEDVPPPEEDEFETLERVMEMRMGRKGATGAVTTVYAVEADGDPNANFDPNRQ
PGEVQYLIKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKEQEKKKWLKAASPEDVE
YFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIARK
FQKCIDEYMSRNQCKTIPYRDCKVLKQRPRFMPMKKQPHYIGADGLELRDYQLEGLNWMA
HSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQLWA
PQMNVVVYLGDINSRNMIRTHEWMHPQTKRLKFNVLLTTYEILLKDKSFLGNVSWAFIGV
DEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEE
EHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRN
YKALSKGTKGSKSGFLNIMMELKKCCNHCYLIKSPEDNEFYNRQEGLQHLIRSSGKLILL
DKLLVRLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQALDHFNAE
GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV
TKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPFNKEELSAILKFGA
EELFKELEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMEDEEID
MDTERDDKNWDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQINFNGNEGRRSRNR
RYSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIAR
DAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPERTSGGRRGKVKGPTFRISGVQVNAK
LVISHEEELAPLHKAIPADPEERKRYIIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGS
WEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSR
KRKPRGKKNKAVKPKMDDVTNSLSSAPPSDKSSEEEDEKEEEEKETPPVKTANRRARVPE
RSVKEEEDEEEDEESDEDEPEDKEPEEKDVTEKVVKKEIKKEKKEEGRDSKEREPKEKEI
KSEPEEESPAEKAVEVKTEVREKKADTPVHTPSGGDAIPLSEESEELDQKTFSVCKERMR
PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLREYTNPEQIKQWRKNLWIFV
SKFTEFDARKLHKLYKHAIKKRQENAQAVEQNTSTVNTQSFKHADVERIKESQQDDSSRD
SYSSDRHHSSRYHEHSKDRHTGDSYRKSSDSRKRPYSSFSNGKDHRERERDQYRERGERQ
DSRYYSESKHRKLDEHRSSREHRSESNSKDRTHSEHRFHSEHRPASDYTHHKSSRDYRYH
SDWQMEHRPRSPRDQRSPYDSRSPLGRRSPFEYSSDHRSTPEQVWSGRKT
NT seq 5373 nt   +upstreamnt  +downstreamnt
atggatggacgcagtgaagatgaaagtgtcagcaacagcagtggagagtccagtaattca
gatgatgagtctgggtcaggatcgggttctggctcggggtcgagttcaagcagtagcagt
tctagcagtagccaatcagggagcagtgactcaggaagcggctcagattctggaagccaa
tcagactcagactctgagaaatccaaggaaaagaatgatcaagacaacaaaatcgacgga
gcagcgttttggaagtccaatcccagtatcctgacagtgcaaaggtcagccatgctcagg
aaacaacagcttcagcagcagcagctccagcagcagagttcctcaaacactggttcagac
gaggactcttccagtagtgatgagtcagatgatgattcaaagagcaggagtaaagggtct
ggttcagactctgactcgggctctggttcaggaagtggctcgtctgactcttcagcagag
gaggaagagaacagtgacgagtcagtgtcagactatgagcccagtcacaaagtcaagagc
agaaaaccttcaaacaaggccaatgccaggaatgggaggaataacaaagctcccaaaaag
aagcccccccgttcctcctcagatgacgaggacgattataaaaaagctctagcgggacct
cggcggcaggccacagtcaatgtgagctacaaagaagatgaggaactgaagactgattca
gatgacctggtggaggtgtgtggagaggacgtcccaccaccagaggaggacgagtttgag
acactggagagagttatggaaatgaggatgggcaggaaaggagcaacgggggccgtaacc
acagtgtatgcagtagaggcagatggagacccaaatgctaactttgaccccaacagacag
ccaggagaggtgcaatacttgatcaaatggaagaactggtcccacattcacaacacatgg
gagacagaggagacgcttaaacagcagaatgtgaagggcatgaagaagctggacaacttc
aagaaaaaagagcaggagaagaagaaatggctcaaagctgcctcacctgaggatgtggaa
tatttcaactgtcagcaggagctcatggatgacttgcattcacaatatcagcttgtggaa
agaatcattggacattcaaatcagaagtctgctgcaggttatccagattacctttgtaaa
tggcaagggctgccatactccgagtgcagttgggaagatggtgctcttattgccaggaag
tttcaaaagtgcattgatgaatacatgagtcggaatcagtgcaaaaccattccctacaga
gactgcaaggttttaaaacagaggccacggtttatgcccatgaagaagcagcctcactac
attggtgcagatgggttggagctgcgggactatcagttggagggtctgaactggatggcc
cattcttggtgcaaaggaaacagttgtatcctggcagatgagatgggtctgggcaaaacc
atccagacaatcagcttcctcaattacttgttccatgagcaccagctttacgggcccttc
cttctggtggtgcctctgtctaccctcacatcctggcagagggagatccagctctgggct
cctcagatgaatgttgtggtgtacctgggagacatcaacagcaggaacatgatccggaca
catgaatggatgcatccgcaaaccaaacgactgaagttcaacgttctgcttacgacgtat
gaaattctgctgaaggataagtcatttttaggaaatgtaagctgggcattcattggtgta
gacgaggcccatcggctgaagaacgacgactcgctcctctacaagactatgatcgagttc
aagtccaaccacaggctcctgatcactggcacacccctccagaactcactcaaagagctc
tggtctctactacattttattatgcctgaaaaatttcactcttgggagatgtttgaagag
gaacatggcaaaggcagagattctggctataccagccttcataaggagctggagcccttc
ctgctgcgcagagtgaagaaggatgtggagaaatctctgcctgccaaggtggagcagatt
ctcagggtggagatgagtgctgttcagaaacaatactacaagtggatattgacaagaaac
tataaagccctgagtaaaggcactaaaggaagcaagtcaggcttcctcaacatcatgatg
gagttgaagaaatgctgtaaccactgctacctcattaaatcgcctgaggacaacgagttc
tacaacagacaagaaggcctacagcaccttattcgcagcagtgggaagctgatacttctg
gataaactgctggttcggctgaaggaacgagggcaccgtgtgctcatcttctcccagatg
gttcggatgctggacatcctggctgagtacctgaagtaccggcaattcttattccagaga
ctggacggttccataaagggtgagatgaggaagcaggcattagatcattttaatgcagag
ggctccgaggatttctgcttcctgttgtccacgcgagcgggtggtctgggcattaacctg
gcctctgcagatacagtggtcatttttgactccgactggaaccctcagaatgacctgcag
gcccaggccagagctcataggattggtcagaaaaaacaggtgaatatttaccgtctggtg
acaaagggctcagttgaggaggaaattattgagagagccaagaagaaaatggtgttggac
catcttgtgattcagaggatggacaccacgggaaagaccgtccttcacacgggtgctgct
ccttccagttccactccattcaacaaggaggaactgtcagccatcctgaagtttggtgct
gaagaacttttcaaagagctggagggagaggagcaggagcctcaggagatggatatcgat
gaaatcctaaagagagcagagaccagagagaacgaccctggaccatccactgtaggagaa
gagctcctctcacaatttaaggtggcaaatttctccatgatggaggatgaggaaatcgac
atggacactgagagggatgataaaaactgggatgacattatcccagaggagcagcggagg
agacttgaggaagaggagcgacaaaaagagctagcagagatctatttactgcctcgcatg
aggaaatgtgctaaacagatcaactttaatggaaacgagggcagacgtagccggaacaga
cgatactctggttcagacagcgattctgtctctgacagaaagaggcccaagaaacgagga
agacctcgaactattccaagagagaacattaagggtttcaccgatgctgagatacgcagg
tttatcaaaagttataaaaagttcggtggccctttagaaaggcttgatgctattgctcgt
gatgctgagttggtggataaatcagagcatgatctgcggcgtctggctgagactgtacat
aacggctgtttgaaaacgctaagggagaacccctgtggaccagaaagaacctcaggaggc
aggcgagggaaggtgaaaggacccacctttaggatctcaggggttcaggtcaatgctaag
ctagtgatctctcatgaggaggaactggcaccattacacaaggccattcctgctgaccca
gaggagaggaaaaggtatataatcccatgccactcaaaggcagctcattttgacattgag
tggggtaaagaagacgactccagcctgcttattggaatttatgagtacggatatggcagc
tgggagatgatcaagatggacccagacctcaacctcacacataagctccttccagatgat
cctgacaagaagccacaggccaaacagttgcagacacgagctgactacctcatcaaatta
ctgagcaaagacctcgccaagaaggaagcacagaaacaagccggcacagcaaattcacgc
aagagaaaaccacggggcaagaagaataaagctgtaaaacccaagatggatgacgtgacg
aacagtctgtcctctgcaccgccatcagataagagctctgaagaagaggatgagaaggag
gaagaggaaaaggaaactcctccagttaagacggccaacagaagagcacgtgtgccagag
cggtcggtaaaggaggaggaggacgaggaggaggatgaggaatctgatgaggacgagcct
gaggataaagagcccgaagaaaaggacgtaacggagaaagtggtcaaaaaagagattaag
aaggagaagaaagaagagggtcgggacagcaaggagagggaaccaaaagagaaggagatc
aagtcagagcctgaagaagagtctcctgcagagaaggctgtagaggtgaaaacagaagtg
cgggaaaagaaagccgacactcctgtgcacacgccctcaggaggagatgcaattccactg
tctgaggagtctgaagaattggaccagaaaacctttagtgtgtgtaaggagcgcatgcgg
ccagtgaaggcagcactcaagcagctggatcgtccagagaagggcctgtctgagcgcgag
cagctggagcacacgcgccaatgcctgatcaaaataggagatcacatcactgagtgtctg
agagaatacaccaaccccgaacagatcaaacagtggaggaaaaatctgtggatatttgtt
tcaaaattcacggaatttgatgcaaggaaactgcataaactgtataaacacgccatcaag
aaaagacaagaaaatgctcaggcagtggagcagaacactagcactgtaaatacacaaagc
tttaaacatgcagatgttgagcggataaaggagtcacagcaggacgacagcagcagagac
agctacagctctgacagacaccactcatctcgctaccacgaacacagcaaagatcggcac
acaggcgactcgtacaggaagagctcagattccaggaagagaccctactcctctttcagc
aacggcaaagaccacagagagcgagagagagaccagtacagagaaagaggagagcgacaa
gacagcagatactacagcgagagcaagcacaggaagctggacgagcaccgctccagcaga
gagcaccgatcagaaagcaactccaaggacaggacgcactccgaacaccgattccactct
gagcaccggcccgcctccgactacacgcatcacaaatcgtcccgggactaccgctaccat
tcggactggcagatggagcaccggccgcgctcgccacgagaccagcgctcgccgtacgac
tcgcgctcgccgctcggacgccgctcgcctttcgagtactcgtccgaccacagaagcaca
cccgaacaggtctggagcggccgcaagacataa

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