Labeo rohita (rohu): 127172017
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Entry
127172017 CDS
T09007
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127172017 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127172017 (taf5)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172017 (taf5)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127172017 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
127172017 (taf5)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127172017 (taf5)
STAGA complex
127172017 (taf5)
TFTC complex
127172017 (taf5)
SAGA complex
127172017 (taf5)
SLIK complex
127172017 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
WD40_like
VPS8_N
LisH_TPL
PROPPIN
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
127172017
NCBI-ProteinID:
XP_050977001
LinkDB
All DBs
Position
1:complement(17893468..17902417)
Genome browser
AA seq
745 aa
AA seq
DB search
MAAVQDGPMELDAEKETKPEILSDGTSNLSGNTASGTMSSSPLTAAPAGGAPKMEDQQTL
IAVLQFLKRNKLMESVDILRREAGLGEDQEDSQALDGSGGVKGDGDGGDTNSLLSRVSMA
SAAAPQSTLTPMPAKSANDQPDVSVVLSAYSQQGDPSLYKVYYSDLKNFIESVLDCHRAE
LSQLFYPLFVHMYLELVYNNNENEAKAFFEKFSGDQECYYQDDLRVLCGLSKKEHLKGNE
ALLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKSQIDSM
SGSLAGEARREVNKVKVFYGLLKEPEIEVPLDDEDDEAENEEGKPKKKKTKKDSMGSKSK
KQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGPENLPSICFYTFLNAYQGLTA
VDFTDDSSLLAGGFADSTVRVWSVTPKKLRKVKSAAELNLIDKESDDVLERIMDEKTASE
SKILYGHSGPVYGVSFSPDRNYLLSSSEDSTIRLWSLQTFTCLVGYKGHNYPVWDTQFSP
FGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTVRLWD
VLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIY
ALKFSRDGEILASGSMDNTVRLWDSLKAFDDVETDDFTATTGHIHLPDNSQELLLGTYHS
KSTPVTHLHFTRRNLLLAAGAYNSQ
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggaccgatggagctggacgcagagaaagagacaaaaccagaa
attctcagcgatgggacgtcaaacctctcggggaacacagcgagcgggaccatgtcctcg
tcgccgctcaccgctgcccccgccggtggagctccgaagatggaggaccagcaaactttg
atcgcagttctgcagtttctaaagcggaataaactgatggagtcggtggatatcttacgg
cgggaagccggtttaggagaagaccaggaggactcacaggctctcgatggcagcggagga
gtcaagggtgacggggatggaggggatacaaactctctgctcagccgggtatccatggca
tcagcagccgccccccaaagcacactgactcccatgccagctaagagtgcaaatgaccag
ccggatgtcagtgtggtgttgtcagcgtacagccagcagggggatccctccttgtataag
gtttactacagcgacctgaagaacttcatagagtccgtgctggactgtcacagagcagag
ctgtcccagctcttctaccctttgttcgttcacatgtacctggagctggtctacaacaac
aatgaaaacgaagcaaaggctttctttgaaaagtttagcggtgatcaggagtgttactat
caggatgacctgcgcgttctctgtggccttagtaagaaagagcacctcaaggggaacgag
gcgctgctggatttccgcaccagccgttttgtactgcgcatctccagagactcgtaccag
ctactgaaaagacacttgcaggaaaggcataataaccagatatggaacatcattcaagag
cacttgtacatcgacatatttgacggcatgcctcgcagcaagagccagatcgatagcatg
tccggcagtcttgcaggagaggccagacgagaagtcaataaagtcaaggtattctatgga
ctgctaaaggagccagagattgaggtcccgttggatgatgaagatgatgaagcagaaaat
gaggaagggaagcccaagaagaagaaaacaaaaaaggacagtatgggctccaagagtaag
aaacaagaccccaacgctcctcaacagaacaggatccctctgccggagctgaaggactcg
gacaaactggataagatcatgtacatgaaggagagcaccaaaagaatccggctcggcccg
gagaacctgccttccatttgcttctatacgttcctcaatgcttaccagggtttgacggcg
gtagacttcactgacgactccagtctgttagcgggaggttttgcagactccacggtccgc
gtatggagtgtcacacccaaaaaattacgcaaagttaaatctgcagcagagctgaatctg
attgataaagagtctgatgatgttctggagagaatcatggatgagaagacggccagcgag
tcgaagatcctctacggtcatagcgggccggtgtatggtgtcagcttcagtccagacagg
aactatctgttgtccagttctgaagatagtacaatcagactgtggagcctgcagacgttt
acgtgtctcgtggggtataaaggacataactatccagtgtgggacactcagttctcaccc
ttcggctattactttgtgtctggaggacatgacagagtagcacgtctttgggcgacggac
cattaccagccattgcggatatttgctgggcatctagctgatgtcacctgtacacgattc
caccccaactctaactatgtggccacgggctcgaccgaccgtactgtacgcctctgggat
gtcctaaatggaaactgtgtccgcattttcacaggtcacaaggggcccatccattctctg
gcattctcacctaacggaaagttcctggcatctggatccacagacgggagagttttacta
tgggatattggacacgggctgatgatcggagagctgaagggtcacacagatacaatttat
gccctcaagttcagcagagatggagaaatcctcgcatcaggctctatggataacacagtt
cgactgtgggactccttgaaggctttcgatgacgtggagacagatgacttcaccgcaacg
acggggcacattcacctgcctgataactcgcaggagttactgcttgggacataccacagc
aaatctacacctgtcacccacctgcacttcaccagacgcaacctactattggctgcaggc
gcatacaactctcagtga
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