Labeo rohita (rohu): 127172138
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Entry
127172138 CDS
T09007
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127172138 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127172138 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
127172138 (pdlim5b)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
zf-C3HC4_3
LIM_FHL2-3_N
DUF3854
Motif
Other DBs
NCBI-GeneID:
127172138
NCBI-ProteinID:
XP_050977238
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Position
10:complement(25651267..25764265)
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AA seq
618 aa
AA seq
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MSNYSVSLIGPSPWGFRLQGGKDFSMPLTISKLTEGGKAAKAKISVGDVVLSIDGIATEG
MTHLEAQNKIKACTGNLNLSLLRSSSVTKTEAPKEEPQEIIKPVPITQTPAAASSPASLA
PGNSAYNKTARPFGGTVNTVRSVSPSPAAPKASIPSASSAFTPAAPSQQPPQPPFPLGAN
RTLSSPSSAPKPASGRSPFANSSSTSSSGSSSPARVTVPAPPPAPAPAPAAPHSSVYNTP
INLYSNENACEVAMGQRRGLLEGRVTGEQHNGTARKPVLEVEGNHVPALSDASKKRLIED
TEDWHPRTGTSQSRSFRILAQITGTENEQAQENRPGKNEAAEQLQPSSHAMTSVKTMSKA
PAGAPRQGNGVPPPAAKGWQSSSAAGFPKAGAPAPQTGPSFGRVSDSVPKGPERPAPQVH
PDDDSLVQRAEHIPAGTRTPMCAHCNMVIRGPFLVALGKSWHKEEFTCTHCHSSLADVGF
VEEHGSVYCERCYEQFLAPSCFKCQQKILGEVINALKQTWHVYCFLCTTCQQPIRNNTFH
LEDGQPYCEMDYYTLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSLEGQTF
FSKKDKPLCKKHSHTVQF
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagtaactacagcgtgtccttgatcggaccttcaccctggggcttcagacttcagggt
ggcaaggacttcagcatgccgctcaccatctccaaactgacagagggtggaaaggcagcg
aaggccaagatcagcgttggggacgttgtgctctctatagatggcatcgccacagaggga
atgacacacctggaagcccagaataaaatcaaagcctgtacgggaaacctgaacctctcg
ctgctgagatcttccagtgtcactaaaacggaggccccgaaggaggagccgcaggagatc
ataaagcccgttcccatcacccaaacgcccgcggccgccagcagccccgccagcctggcc
ccgggaaacagcgcctacaataagacggcgcggcccttcggcgggaccgtaaacacggtc
agatcggtcagtccgtcccctgccgcgcccaaagcctccatcccctccgcctcctctgcg
ttcaccccggccgctccgtcccagcagcctcctcagcctccgttcccgctgggagccaat
cgcacgctgtcctctcctagctccgcccctaaacccgcctctgggcgctccccctttgct
aactcctcctccacgtcatcttctggctcctcctccccggcgagagtgacggttccggct
ccgcccccggcccctgcgcccgcccccgctgcccctcattcgtccgtgtataacacgccc
atcaacctctactccaatgagaacgcgtgtgaagttgccatgggtcagagacgcggcctg
ctggagggcagagtcacaggggaacagcacaacggaaccgcccgtaagcccgtcctggag
gtggaggggaaccacgttcctgcgctgagcgacgccagtaagaagcgtctgatcgaggac
acggaggactggcacccgcgcaccggcacgtctcagtcgcgctccttccgcatcctggcg
cagatcaccggcacagagaacgagcaagctcaggagaaccggcctggaaagaatgaggcc
gcagagcagcttcagcccagttctcatgccatgacttcagtcaaaaccatgagcaaagcg
cccgctggagccccgcggcagggaaacggcgtccctccgcctgcagccaagggctggcag
tcgagcagcgccgcagggtttcccaaagcaggtgcacctgcgccgcagacgggcccctcg
ttcggacgggtcagcgacagcgtcccgaagggcccggaacgacccgcgcctcaggttcac
cccgacgacgattcgctggtgcagagagccgaacacatcccggcgggaacacgcacgccc
atgtgcgcccactgcaacatggtcatcaggggtccgttcctggtggcgctgggcaagtcg
tggcataaggaggagttcacctgcactcactgtcacagttctctggcagacgtgggtttc
gtggaggagcatggctccgtttactgcgagcgctgttacgagcagtttctggccccgagc
tgcttcaaatgccagcagaagattctgggggaagtcatcaatgccctgaagcaaacctgg
catgtgtactgcttcctgtgcaccacctgccagcagccaatccgcaacaacaccttccac
ctggaggacggacagccgtactgcgagatggattactacaccctgtttggcaccagctgt
cacggatgtgatttccccatcgaagcgggcgataagttcctggaggcgctgggattcacc
tggcacgacacctgcttcgtctgcgcggtgtgcagcacgagtctggagggtcagaccttc
ttctccaagaaagacaagcccctgtgcaagaaacactctcacaccgtccagttctga
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