Labeo rohita (rohu): 127172151
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Entry
127172151 CDS
T09007
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127172151 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127172151 (rabgef1)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
127172151 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
127172151 (rabgef1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
Sulfotransfer_3
Motif
Other DBs
NCBI-GeneID:
127172151
NCBI-ProteinID:
XP_050977264
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Position
10:5466549..5478016
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AA seq
549 aa
AA seq
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MSQRSERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQKARQRQIQEDWALAEK
LQREEEAAYVSSHSSSQTQPPQSHSQHSLATFSKFEEKKTNEKTRKVTTVKKFFSPSSRT
APKKVPPGKESEKREKEKEEKLQGRRESHGENLLRDLKGIFTQPWEMASPTEESHEGKTP
SPSITRQSSIETDRVSRDFVEFLKALQKPGREIHKQSRGFIESMGNKKDLSAEELSECVQ
DFYQSMSDRLLNHFKGSSEKVDRVMDQVEKYIMTRLYKSVFCPETSDDEKKDLATQRRIR
ALHWVTIQMLCVPVDEEIPEVSDSVVKAITDIIEMDSKRVPRDKLACITSCSKHIFNAIR
VTKNEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAV
AFIEKLDAHSLNLSPEDFERYMSGQASPRRQDDPAAWPQSGSRVNPALSQIHHNLKLLSN
LDKRQQQVIEGAQNLQTELAEWQDSVAREVQEILERYPLEIKPRASAIDAENVENDRLPP
PLQPQVFAG
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcgatcagagcgacgggggatccatgtggaccaatcagaactgctgtgtaag
aaaggctgcggttactatggcaatgctgcatggcaaggcctgtgctccaagtgctggagg
gaggagtaccagaaagctcggcagaggcagatccaggaggactgggccctggctgagaag
ctgcagcgagaagaggaggcggcttatgtcagcagtcacagttcctctcagacccagccc
ccgcagtcccactctcagcactctctcgccacattctccaagtttgaggagaagaaaacc
aatgagaagacccgtaaggtcaccaccgtaaagaagttcttcagcccctcctctcgcacg
gcccctaaaaaagtcccccccggaaaagaaagcgagaaacgggagaaagagaaagaggag
aagttgcagggcaggagggagagccatggagaaaacctcctgagggatctgaagggcatt
tttacccaaccctgggagatggcctcccccactgaagagagccacgagggaaaaacaccc
agtccttccatcacccgtcagtccagcatcgagaccgatcgcgtgtcacgagacttcgtg
gagtttctaaaggccttacagaagcccggcagagagatccacaagcagagtcgtggtttc
atagagagcatgggaaataaaaaggatctgagtgctgaagagctgtctgagtgtgtgcag
gacttctatcagagcatgtctgaccgactcttgaatcattttaaaggctcctctgagaaa
gtggacagggtaatggaccaagtggaaaaatacatcatgactcgactctacaaaagcgtt
ttctgtccagagacctcggatgatgagaaaaaagacctggccacccagcgcaggattcgg
gccttacactgggtaaccattcagatgttgtgtgttcctgtggacgaggagatccctgaa
gtctctgatagtgtagtcaaagccatcaccgatatcattgagatggactccaagcgtgtg
cccagggataaactggcctgcatcaccagttgcagcaagcacatcttcaacgccatcagg
gtcaccaagaacgaaccagcttctgcagacgacttcctacccaccctcatctatatcgtg
ttgaaggccaacccgccacggctgcagtccaacatccagtacatcacacgcttctgcaac
ccttcaagacttatgactggagaggatggatactacttcaccaacctgtgctgtgccgtt
gccttcatagagaagctggacgcccactcgttgaatctcagccctgaggactttgagcgc
tacatgtccggtcaggcttcccctcgaaggcaagacgatcccgcagcctggccgcagagc
ggctcccgtgtcaacccagcacttagccagatccatcacaacctcaagctcctatccaac
cttgacaaacgacagcagcaggtcatcgagggggcgcagaaccttcagaccgaactggca
gaatggcaggacagcgtggctcgcgaggtgcaggaaatcctggagcgatacccgctagag
atcaaaccacgagcatccgcgatcgatgcggagaacgtggaaaacgacaggctgccacct
cctcttcaaccacaagtatttgcgggttag
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