Labeo rohita (rohu): 127172228
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Entry
127172228 CDS
T09007
Symbol
sbno1
Name
(RefSeq) LOW QUALITY PROTEIN: protein strawberry notch homolog 1
KO
K26273
protein strawberry notch
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172228 (sbno1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127172228 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
127172228
NCBI-ProteinID:
XP_050977402
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All DBs
Position
10:complement(29588769..29610399)
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AA seq
1392 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDLFDVDPQDTLPLPASQQSVSLNALDIGLGNEASGIVRIE
PAVPPTPTVTIREKPQPSTTTFVLNQLNQLPSLGTIVVTKPSAGTTSRQTITVTKVVHTS
STAQRSALSSPTVCTVVPPNNEQIRLKDLLRTSSLKTSSLGELMKLKPPPDIAQPVATAT
ATGTTELNNGLKKEVSSKDVARIWVNDDMKMRSFSPVNKLPGMKEEEEPEEEEEEELGHA
ETYAEYMPMKLRIGLRHPDPVVETSSLSSVNPPDVWYRLSIPEETIDRGWLSALQLEAIT
YAAQQHETFLPNGDRAAYLIGDGAGVGKGRTIAGIIYENYLLGRKRSLWFSVSNDLKYDA
ERDLRDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRFK
QLLHWCGDDFDGVIIFDECHKAKNVCPIGSSKPTKTGLAVLELQNKLPKARVVYASATGA
SEPRNMAYMNRLGIWGEGTPFKEFTNFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFT
GVTFKIEEVPLTLDYIKMYNKSVRLWVSAREKFQQAANLMDAEQRMKKSMWGQFWSAHQR
FFKYLCIASKVRRVVQLAREEVKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAKG
VLQSLVEKHFPAPDRQKLFSLLGIDLSAKETPSPSETSAEQKGKKRKGPETKKQVKKARK
SGGLSGTSSDESNSDDSDKDAESDDSFKSVSSGGGDEDDFNPFKDDSSEDEEDDPWLIRK
DTKKSKDKRNKKKKKSIDPDSIQSALLASGLGTTRPNFTTPTIKPSNNTVAVAKSEPEES
SCVTSQDAVEDAQRMKRDLLEKLEQLAENLPPNTLDELIDELGGPDNVAEMTGRKGRVVS
NDDGSISYESRSELDVPVEILNLTEKQRFMDGDKNIAIISEAASSGISLQADRRVKNQRR
RVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGAL
THGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVSLDSPLVSPPADFDGDFFKEIRNGL
IGVGLINVEDRSGVLSLDKDYNNIGKFLNRILGMEVQQQNALFQYFSDTLNAVIQNAKKS
GRYDMGILDLGSGDEKVKKVDVKKFLTPGYSTSGHVELYTVSVERGMSWEDATHVWADQN
GPDDGFYVQVRNNKKIAILIKEVNTRKRLFMVYRPNIGKQVKLETYADIKKRSKKVLSDD
AKQHWIDQYNSSANVCSHAYWRGNCKKVSVGLQCEIGLRCRTYYVLCGSVLSVWTKVEGV
LAAVSGTNVKMQIVRLRTEDGQRIVGLIIPANCVSPLVNILSSSDQSQQLAVQQQQMWQQ
LHPQSISHTVNT
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggacaggatttgcttctggctgctcttagtgaaagtggaatctgccctaat
gatctatttgatgttgatcctcaggacacacttccactccctgcttcacaacagtcagtc
tcattaaatgcacttgacatcggtctcggcaatgaagcttctggaattgtcaggattgaa
cctgcagttccacctactcctacagtcacaatcagggagaagcctcagccctcaacaacc
acctttgttttaaatcaactgaatcagttgccatcgctgggtacaattgtagtcaccaaa
ccatcagccgggaccacctccaggcagaccatcacagtaaccaaggtggtgcacacaagt
tcgacagcacagcggagcgctttgtcctctcccaccgtttgcactgtggtcccacccaat
aatgagcagatcaggttgaaggaccttctcagaaccagcagcctgaagacaagcagcctt
ggagagcttatgaagttgaagcccccacctgacatagcgcaacctgttgctacggcaaca
gccacaggcacaacggaattaaacaatggcttgaaaaaggaagtgtccagcaaagatgta
gcaagaatctgggtcaatgatgacatgaaaatgcggagcttctcacctgtgaataaattg
ccaggaatgaaggaggaagaggaaccagaggaagaggaagaagaggagctgggtcatgca
gagacatatgctgaatacatgccgatgaaactgagaattggactgcggcaccctgatcct
gtggtagagaccagctctttgtccagtgtcaacccgccagatgtgtggtacagactttcc
attccagaggaaaccattgatagaggctggttatctgccctacagcttgaggctatcacg
tatgctgctcagcaacatgagacattcctaccaaatggagacagagcagcctacttgatt
ggagacggggccggcgttggaaagggaagaaccattgctggaatcatatatgaaaattat
cttcttggcaggaaaagatccctctggtttagtgtctcaaatgacttgaaatacgatgca
gagagagacttgagagacattggagcaaagaatattcaggtccattcactaaacaagttc
aaatatggaaagatctcatcaaaacacaatgggagtgtgaaaaaaggtgtgatctttgcc
acatactcctcattgattggagagagccagtctgggggaaagtacaagacgagattcaaa
cagttgctacactggtgtggagatgactttgatggtgttatcatatttgatgagtgtcac
aaagccaaaaatgtttgccctattgggtcatccaagcccacaaagaccgggctagcggtt
ttagagctgcagaacaagctgccaaaagcccgggttgtgtatgcaagtgctacaggagca
tccgaaccccgcaatatggcctacatgaatcgccttgggatctggggggaaggaactcca
tttaaggaatttacaaattttatccaagctgttgaaagaagaggtgttggtgctatggag
attgttgccatggatatgaagctgagaggaatgtacatcgctcgacagctgagcttcaca
ggcgtgacgtttaaaatcgaagaagttcccttaacgctggactacatcaagatgtacaac
aaatcagttcgcttgtgggtaagtgcaagagagaagttccagcaagctgccaacctgatg
gatgcagaacaacggatgaaaaaatccatgtggggccagttctggtccgctcaccagagg
ttcttcaagtacctgtgcatcgcctccaaggttcggagagtggtgcagctggctagagag
gaggttaaaaatggaaagtgtgtggtgattggtcttcaatcaactggagaggctcgaacc
cttgaggccttggaggagggaggaggcgagctcaatgactttgtctccactgcgaagggt
gtactgcagtccctggtggagaagcattttcctgcaccagacagacaaaaactcttcagt
cttttaggcatcgacctgagtgcgaaggaaacgccttcaccttcggaaacctccgctgag
cagaaaggcaaaaagcgcaaaggtccagaaacaaagaagcaagtgaagaaagctcgtaaa
tctggcggtctgtctggtaccagctcagacgagagcaactcggacgattcggacaaagat
gcggaaagcgacgacagcttcaagtcagtcagctcagggggaggagacgaagatgacttc
aacccctttaaggatgattccagtgaggatgaggaagatgatccatggctcatcagaaaa
gacactaagaagagcaaagacaagaggaacaagaagaagaaaaagagcattgatccagac
tctattcaaagtgccttgttagcctccgggcttggaacaaccagacccaattttacaacc
cccaccatcaaaccttcaaacaacacggttgctgtagccaaaagtgagccagaggaaagc
agctgtgtgaccagtcaggatgctgttgaagatgcccagcggatgaagagggacctgctg
gagaaactagagcagctggcagagaatctgccgcccaacacgctcgacgaactcattgat
gagctgggaggacctgataatgtcgcagagatgactggccgcaaaggcagggtagtcagc
aatgacgatggcagcatttcctacgagtctcgatcagagcttgacgttccagttgaaatc
ttaaacctcacagagaagcagaggttcatggatggtgataagaacatcgcaattatctca
gaggctgccagctctggtatttcacttcaagccgaccgcagagtgaagaaccagaggagg
agggtacacatgacattagagctgccctggagtgctgacagagctattcagcagtttggt
cgaacacaccgatccaaccaggtcacagcacctgagtatgtgtttctcatctctgaactt
gctggagagcaacgattcgcctcgattgttgccaaacgactggaaagcctgggggcgtta
acgcacggagacagaagggccacagagacaagagatctcagccgatttaactttgacaac
aaatacggcagaaatgctctggaaatagttatgaagtctattgtcagtctggactctcct
ttagtgtctccacctgctgactttgatggggatttcttcaaagaaatccgcaatggttta
attggagtggggctgataaatgtggaagataggtctggtgttctgtcactggacaaagac
tacaacaacatcgggaagttcttgaacaggattcttggaatggaggtccaacaacaaaat
gctctctttcagtatttctccgacactttgaacgctgtcattcaaaacgccaaaaagagt
ggaagatacgatatgggaattttagatttgggctccggagacgagaaagtgaagaaggtt
gatgtaaagaaattcttgacaccaggatattccacctcagggcatgtggagctttataca
gtgagtgtagagcggggaatgtcatgggaggatgccacccacgtctgggctgaccagaac
ggacctgatgatggcttttatgtccaggtgcggaataacaagaaaatcgccatcctgata
aaggaggtcaataccagaaagagactctttatggtgtacagaccaaatataggaaaacaa
gttaaactagagacgtacgcagacatcaaaaagagaagtaaaaaggtcctctctgatgat
gccaagcagcactggattgatcagtacaactcctcggcaaatgtctgctcacatgcgtac
tggcgagggaactgtaagaaagtgtcggtggggctgcagtgtgagatcgggctgcggtgc
aggacatactacgttctctgtggctctgtcctcagcgtgtggaccaaagtggagggcgtg
ctggccgcagtcagcggaaccaacgtgaagatgcagatcgtacgtttgagaacagaggac
gggcaaagaattgtgggtctgatcattcccgctaactgcgtgtcacctctggtcaacatc
ctgtcatcatcggatcagtctcagcagctggccgtgcagcagcagcaaatgtggcagcaa
ctccatccgcagagcatcagccacaccgtcaacacatag
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