KEGG   Labeo rohita (rohu): 127172272
Entry
127172272         CDS       T09007                                 
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03030  DNA replication
lroh03410  Base excision repair
lroh03420  Nucleotide excision repair
lroh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127172272 (rfc3)
   03410 Base excision repair
    127172272 (rfc3)
   03420 Nucleotide excision repair
    127172272 (rfc3)
   03430 Mismatch repair
    127172272 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lroh03032]
    127172272 (rfc3)
   03036 Chromosome and associated proteins [BR:lroh03036]
    127172272 (rfc3)
   03400 DNA repair and recombination proteins [BR:lroh03400]
    127172272 (rfc3)
DNA replication proteins [BR:lroh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127172272 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    127172272 (rfc3)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127172272 (rfc3)
DNA repair and recombination proteins [BR:lroh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127172272 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    127172272 (rfc3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA AAA_22 AAA_16 ABC_tran AAA_11 DUF2247 AAA_5
Other DBs
NCBI-GeneID: 127172272
NCBI-ProteinID: XP_050977468
LinkDB
Position
10:4841938..4845612
AA seq 356 aa
MSLWVDKYRPSSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY
GPGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ
IQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCL
AVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPF
SPDQDIPETDWEVFLRETANAIVSQQSPQRLLEVRGQLYELLTHCIPPEVIMKGLVTELL
SNCDGHLKAEVAQMAAYYEHRLQLGNKAVYHLEAFVAKFMAIYKKFMEDGLDNFMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttgtgggtggataaatacagaccatcgtccttggctaaactcgactaccacaag
gagcaagcaaaccagctcaaaaatctggtccagtgtggtgattttccacacttgttggtt
tatggaccgtctggtgctggtaagaaaacccggatcatgtgtttgctcagagaactgtac
ggacccggggtcgagaaactcaggattgaacaccagtccatcacgactccttctaaaaag
aaacttgagatcaacacaattgccagcaactaccatttagaggtgaatccaagtgatgct
ggaaacagtgaccgggtggtcatccaggagctgatcaaaactgttgcccagtctcagcag
attcagtccagcgcgcaaagggagttcaaagtggtgctactgacggaggtggaccgtctc
actaaagacgcccagcacgctttgcgccgtacgatggagaagtacatgtccacttgtcga
ttgatcctgtgctgtaactccacatcaaaagtgattgcccccatcaggagcaggtgtctg
gctgtgagagtccccctaccaagtgtggaagaggtctgcagtgttctgtcaggcgtgtgc
aggaaggaggggcttttgcttcctcctgaactagccaaacagatcgccgagaaatcaggc
cgtaaccttcgtaaagccctgctgatgtgtgaggcctgcagagttcaacagtatccattc
tctccagaccaggacatccctgagacagactgggaagttttcctcagagagactgctaat
gctatagtcagccagcagagccctcaaagacttttggaggttcggggacaattgtatgaa
cttctgactcactgcatcccgccagaagtcatcatgaagggcctggtgacagagttgcta
agtaactgtgatggacacttgaaggctgaggtggctcagatggccgcatactacgaacac
agactgcagctgggcaacaaagcagtctaccacctggaggcctttgtagctaaattcatg
gccatctacaagaagtttatggaggatggacttgacaactttatgttctga

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