Labeo rohita (rohu): 127172315
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Entry
127172315 CDS
T09007
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127172315 (scaf4a)
03041 Spliceosome [BR:
lroh03041
]
127172315 (scaf4a)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127172315 (scaf4a)
Spliceosome [BR:
lroh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
127172315 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
127172315
NCBI-ProteinID:
XP_050977522
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All DBs
Position
10:10198099..10212558
Genome browser
AA seq
1008 aa
AA seq
DB search
MDAVNAFNHELFSLMDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSSSSTGLDNGPDGASPQSPVREQEAHPVVTPNTIAAAVPQLQN
SDAFAAVAQLIQSSQGQQLQQMLQNFQPPGKPQSPAVDNNRSHLHLQAQAMTATSTLTHQ
HIHHAPQPVEKKATFDKTLLDRFDYDDEPEAGEEAKKDETPSVQPTMGFPEQTVPGFPPA
NQLQHFQQHMMAVSQRQQVVLPSNGQVQGFGLMTSQPYPDMMPQMGQAHAAFPPQNDTFN
QHMAGHQHPEMMNSDASTRPYPDGKRSRSRSGSRSPKRRRSRSNSRTRRMRHRRSRSRSR
ERRRQSPRSRSQERRDREKERERRQKGLPPVKNNTLSVCSTTLWVGQLDKRTQQQDVACL
LEEFGQIDSINMIPPRGCAYIVMIHRQDAYRALQKLSRGPYKVNQKAIKIAWALNKGIKA
EFKQYWDVELGVTYVPWSKVKMEDLDVFREGGMLDPDTLAPEWRSSQIELEKAEESQNGR
PEVGKVEESPAVVPMQVPPVQPMGAVGVPPPGFPGPMNIPPPSFPPGVPPPPGPFIRPGF
NPMQMPPGFLPPGAMPPLGASGPPPPTAGIGMPPVGSSVEDLSNDPAGMGPRINSDGTEG
FNSGNQVPPGGPPGMGMQSPPGLLGSRPGMMPLQRPPGMPLPHMQRFPIPPPRPGMPPIP
PQMMPPRGPPQMMHREPPPGGFGMPPPPHGMRGPFPPPGPPFMRPGGPRPDGPNDHEVRP
FRGERPGLGRGRDREQDWYGGRRPFGERPEGRERFGGWHEEPEKQGGWDRERERRDWRRS
PDGDRDRDRDRDRDRDRGRDGEERTRRSAGSRERSTRWDRDDRLDRLGLTSEEPNERLAA
STNEPSANATKELPEAKPDVPAPSTADSKASEPIAENKSAEQTHAEES
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtcaacgcttttaatcatgagttgttctccttgatggacaccaagcctccc
atctcgagggccaagatgatctccattaccaaatctgccataaaagccattaaattatac
aagcatgttgtccaaatcgtagaaaagttcattaagaagtgcaaacccgagtataaagtt
ccaggactctacgtagtggattccatcgtgagacagtcacggcatcagtttggagccgat
aaagatgtgtttggacctaggttcaccaaaaacatcacaggaacatttgagaatctatgc
ttgtgtcccacagaagataggagtaagatagtgagagtgctgaacctgtggcagaagaat
ggagtgtttaagatcgaggtcattcagcctctgttggacatggctgctggatccagcagc
tcaacaggattggacaatggccctgatggggcatctccacagtctcctgtgagggagcag
gaggctcatcctgtggtgacgccaaacacgatcgcagcagctgtgcctcagcttcagaac
tcagatgcctttgcggctgttgctcagctaattcagtcttctcaaggacagcagcttcag
cagatgcttcagaactttcagccgccggggaaacctcagtctccagctgtggacaataac
agaagtcacctccacctacaggctcaggctatgactgccacctctacgctcacacatcag
cacatccatcacgcaccacagcctgtggaaaagaaagccaccttcgacaagacccttctg
gatcgctttgattatgacgatgagccagaagcgggtgaggaagctaagaaggatgaaacg
ccgtctgtccaacctactatgggatttcctgagcagaccgtcccaggatttccaccagcc
aatcagctgcagcactttcaacaacatatgatggccgtatcacagcggcaacaggttgtt
ctaccttcgaatggacaggtccaaggctttggtctaatgacctctcaaccctatccagac
atgatgcctcagatggggcaggcacatgcagctttcccacctcagaatgacaccttcaat
caacacatggctggacatcagcatccggaaatgatgaattcagatgcatccaccaggcct
taccccgatggcaagaggtcacggtcgcgttcagggtcgagatctcctaaaagaagaagg
tcacgatccaattcccgtacgagacgaatgcggcatcgacggtcgcgctctcgttctcga
gagcgacggcgtcagtcgcctcgatcgcggtctcaggaaagaagagacagagaaaaagaa
cgagaacgaaggcagaaaggccttcctcctgtaaagaataacactctcagtgtgtgcagt
actactctctgggtggggcagctagataaaaggacacagcagcaggacgtggcctgttta
ctagaggagttcgggcagatagattcaattaatatgattcctcctcgtggttgtgcctac
attgtcatgattcatcgtcaggatgcctatcgagccttgcagaaactaagtagaggtcca
tacaaagtcaaccagaaagccattaagattgcctgggctctgaataagggcattaaggct
gaattcaagcagtattgggatgtggagttgggtgtgacctatgtaccatggtccaaagta
aagatggaggacctggatgtgtttagagaaggagggatgctggaccctgatactcttgca
ccagagtggagaagctctcagattgagctggagaaggcagaagagtctcaaaacggcagg
cctgaggtgggaaaagtggaggagagcccggctgtagtacctatgcaggttcctcctgtc
cagcctatgggagcagttggtgtcccacctccaggattcccaggacccatgaacatccca
cctccctcattcccacctggggttcccccacccccgggtcccttcatacggccgggcttt
aaccccatgcagatgcctccaggatttctccccccaggtgccatgcctcctctaggtgcc
agtgggcctcctccacctacagcagggatcggcatgcctccagttggcagctcagttgaa
gacctttcgaacgatccagcaggtatgggcccaagaatcaacagtgatggaacagaggga
ttcaactcaggaaaccaggtgcctcctggaggtccaccaggcatgggcatgcagtctcca
ccaggtcttctaggttcaaggccgggtatgatgcctctccagcggcccccggggatgccg
ctcccacacatgcagcgcttccccattccacctcctcgacctggcatgccacccatccca
ccacaaatgatgccacccaggggtccacctcagatgatgcaccgagagccaccacccgga
ggcttcggcatgccacctcctcctcatggcatgaggggtcccttcccacctccaggtcct
cccttcatgagacctggcggacccagaccagacgggccgaatgatcacgaggtgagaccg
ttcagaggcgagcgccctggtttaggaaggggcagagatcgagagcaggactggtacgga
gggcggcgccctttcggtgagaggccggaaggtcgcgagcgatttggaggctggcacgag
gagccggaaaaacaaggcgggtgggaccgagagagagaacgcagggactggaggagaagt
ccggatggagatagggatcgagatcgagatcgagatcgagatagagatcgaggacgggat
ggtgaagaacggacaaggcgctctgcaggaagcagagagaggagcacacgctgggacaga
gacgatagactcgatcgactgggtctcaccagcgaggaacccaacgagagacttgcagcc
agtaccaacgagcctagtgcaaacgctactaaagaacttcccgaagccaagccagatgtt
ccagcaccttccaccgcagactcaaaagcctcagaacctatagcagagaacaaatctgcc
gagcaaacacacgcggaagaatcatag
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