Labeo rohita (rohu): 127172336
Help
Entry
127172336 CDS
T09007
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04140
Autophagy - animal
lroh04148
Efferocytosis
lroh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127172336 (vps11)
04148 Efferocytosis
127172336 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127172336 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127172336 (vps11)
Membrane trafficking [BR:
lroh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127172336 (vps11)
Hops complex
127172336 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3H2C3
TPR_GEMI5
zf-ANAPC11
zf-RING_UBOX
zf-RING_5
Beta-prop_EML_2
zf_RING_Vps8
ToxA_N
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Glyco_transf_10
Motif
Other DBs
NCBI-GeneID:
127172336
NCBI-ProteinID:
XP_050977556
LinkDB
All DBs
Position
10:7358236..7367789
Genome browser
AA seq
927 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDPSENGKNFQLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHNILVSVGQDEPGINPLVKVWNLDKKDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLSLHEGNCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRIELDTHGCGLRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLTHWHRGYLLLLTDNNKSPSKSDYGSRQTSPTEKHILTIYD
LDNKFIAYSAVFDDVIDVLAEWGSFYVLTRDKTLYMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKILMHHV
PESTTILLKHLCTDYHPSKDSTDRDSLDRPVENKANPEEFIPVFANNPRELRAFLEHMIE
VDPFSPEGVYDTLLELRLQDWAHEQDSGKKKALQEAALSLLRSDHTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDSEVCLWEQALGYFARKEENCK
AYISEVLQHIDDNNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERETQQIEEDERKIRQ
YRDETTHLRSEIQELKTCAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCLESFAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFHRQLKCSNDGFSVIADYFGRGVFNKLTLITD
PPGGKSGAGNLEAEFNRDLLINTKRNV
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcttgcagtggagacgttttgtgtttttcgataaagaaacggtgaaagat
ccgagcgaaaatggaaaaaatttccaactaccggtgggaatatcggcctgtgattcaggt
cgaggacacattgtgcttggagatatggatgggcagatctggtttttgacccgctccctg
cagctatccagctttcaggcttataagctgcgtgtgacacacctgtaccagctgaaacaa
cacaacatcctggtgtctgtgggtcaggatgagcctggcatcaatcctctggtgaaggtg
tggaaccttgataagaaggacagcggcagtcctttgtgtacccggatattccctgccata
cctggaaataaacctactgaagtgtcttgtctcagtgtacatgaaaaccttaatttcatg
gctataggttttacagacggcagtgttgtgctgacgaagggtgacatcaccagagacaga
cacagtaaaactctcagcctccatgagggcaactgtccaatcacgggcctggctttccga
caggctggcaaagtcacacacctgtttgttgcaacattagaaaaagtgcagtgttacaca
ttatcagtgaaagagtaccctcgtatagaactggacacgcacggctgcggcctccgctgc
tccgcgctcacagacccctcgcaggactcccagttcatagtagctggagatgactgtgtg
tatttgtaccagcccgatgagagaggaccctgttttgctttcgatgggcacaagcttctg
actcactggcacagaggatacctgctgctgctcacagacaataacaaatcacccagcaaa
tctgattatggtagcagacaaacatcccctacagaaaaacacatcttgaccatttatgac
ctggacaacaagttcattgcatacagtgctgtgtttgatgacgtcattgacgttctggcg
gaatgggggtctttctatgtcctaacgagagacaaaacactatatatgctgcaagaaaaa
gacacacagaccaagctagagatgctgtttaagaagaacctgtttgtgatggccattaac
ttggctaaaagccaacatctggataatgatggtttgtctgagatattcagacagtatgga
gaccatctctacgtcaaaggggatcatgatggagctattcagcaatatattcgcaccatt
gggaagctcgaaccctcatacgtaatccgtaaatttttggatgcacagaggatacataac
ttgacggcatacctacaggctctccacaggcagtcactggccaacgctgaccacactact
ctgctgctcaactgttacaccaaactgaaggacagctccaagctggaagagttcataaag
agcaatgaaagtgaggtgcatttcgatgttgaaattgccatcaaggtgttacgtcaggcc
ggttatcacagtcacgctgtgtttctggcagagagacacatgcaccatgaatggtatcta
aagatccagctagaggatttgaagaattatcaggaggctttacgctacataggaaggttg
ccatttgatcaggcagagagtaatatgaagcgctatggaaaaattctaatgcaccacgtg
cctgaaagcaccaccatcctcttgaagcacctctgcactgactatcaccccagcaaagac
tcaaccgacagagacagtctggacaggcctgtggaaaacaaggccaatccagaggagttc
atcccagtctttgccaataacccacgagagctgcgagcgttcctggaacacatgatagag
gtggatccattctcacctgagggagtctatgatactctgctagagctcagactacaggac
tgggcacatgagcaggactcagggaagaagaaagccctgcaggaggcagcactgtccctt
ctgaggagcgaccacactgtgtttgacaaggccctggtgctctgccagatgcacaacttc
aaggaaggagtgctgtatctatatgaaaagggcaagctgtaccagcagattatgcattac
cacatgcagaatgaggagtatgggaaagtcgtggaagcctgtaaacgctatggggatagt
gaggtctgtttgtgggaacaggctcttggctactttgcacgcaaagaagaaaactgcaag
gcctatattagcgaagtcctgcagcatattgacgataataacttgatgcctccacttctg
gtggtgcagactttggcgcataattccacagcatctctctcagtcataaaagattacctg
ataaataaactagagagggagactcagcagattgaggaggatgaaaggaagattcgacag
tatagagatgagacaacccatcttcgctctgagatacaggaacttaaaacctgtgcaaaa
atcttccagaagaccaagtgcagcatgtgcaacagcccgctagagctgccatctgtgcac
ttcctgtgcggccactctttccatcagcactgcctagagagctttgcagaaagcgaagcc
gagtgccccacttgcacccctgagaacagaaaagtgatggacatgttgcgcgcacaagat
cagaaacgagatctgcacgaccatttccacagacagctcaaatgctctaatgacggcttc
tcagtcattgctgactattttggccgtggagtgttcaacaaactcactctgataacggat
cctcctggaggaaagagtggagctgggaatctggaggctgaattcaacagagatctgctc
attaacaccaagaggaacgtttga
DBGET
integrated database retrieval system
