Labeo rohita (rohu): 127172459
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Entry
127172459 CDS
T09007
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127172459 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127172459 (mtrex)
03041 Spliceosome [BR:
lroh03041
]
127172459 (mtrex)
03009 Ribosome biogenesis [BR:
lroh03009
]
127172459 (mtrex)
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127172459 (mtrex)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127172459 (mtrex)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127172459 (mtrex)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127172459 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
127172459 (mtrex)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Helicases
127172459 (mtrex)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127172459 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
127172459
NCBI-ProteinID:
XP_050977684
LinkDB
All DBs
Position
10:complement(19460197..19517267)
Genome browser
AA seq
1055 aa
AA seq
DB search
MSFPPRGLRVVLWDLCLFEVMADAFGDDLFSVFDEDQAGSSKKVTPKSAAQSGKTPDKGG
KQQSNSAAVRKRDTDNDGPDEEVLGKKQKLETVSAEEINLSELMPKVKAEQVETVEGCTH
EVVLPADEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAE
YAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQF
AEWICHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRD
AGDTGGNVGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVA
KLDFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETI
EILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRR
GMDERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRAVPGVVEKMKKLEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKP
RYCLPFLQPGRLVRVKREDLDFGWGIVVNFQKKTNAKAGGAEVDPLFVVEVLLHCSKDSV
KNAATEAAKPAGPGEKGEMQVVPVILHLITSISSVRLYIPKDLRPFDNRQSMLKSVQEVQ
KRFPDGVPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKAL
IAGDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELL
LTEMVFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSA
EAKLDVDEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQM
CQAAKAIGNTELENKFATGITKIKRDIVFAASLYL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttccgccacgcggcttgcgcgtcgtactgtgggatttgtgtctgtttgaagtc
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaccaggccggttct
agcaaaaaagtcactccaaagtccgcagctcagtcaggtaagactcccgataaaggcggt
aaacagcagagcaattcagcagctgtgcgcaaaagagatactgacaatgatgggccagat
gaggaggtgcttgggaaaaaacagaagctggaaactgtatcagctgaggagatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgcagatgaagaatacactccactgaaaccacgcgttggaaaagca
gctaaggagtaccccttcatacttgacccttttcagcgtgaggccatcctgtgcattgat
aacaaccagtctgtgcttgtgtctgcccacacgtcggcaggaaagacagtgtgtgctgaa
tatgctattgctctggctctccgagagaagcagcgagtgatcttcaccagccccatcaaa
gctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatg
accggtgacgtcaccattaaccccacagcttcctgcctggttatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcgtgggtcatctttgat
gagatccattacatgagagactcagagcgtggcgtggtctgggaggaaaccatcatcctg
ctgccagacaacgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacagttc
gctgagtggatttgtcatcttcacaaacagccctgccacgtggtgtacacagactaccgc
cccactccactgcagcactacatctttccagcagggggcgatggactccaccttgttgtt
gatgaaaatggagagttcagagaagacaattttaacacggcaatgcaggtcctgagggat
gcgggggacacaggaggcaacgttgggggcaagtgggaccccaaaggcagaaagggtgga
accaaaggtccatccaatgtcttcaagattgtgaagatgatcatggaaaggaacttccag
ccggtgatcatctttagcttcagtaagaaagaatgtgaggcctatgcactgcaggtggcc
aaactggatttcaacacagatgatgagaagaaactggtggaagaggtgttcaacaatgct
acagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccgtta
ctgaagagaggaattggaattcatcatggcggcctcctcccgatcctgaaagagaccatc
gagatcttgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgccatg
ggaatcaacatgcctgcgagaaccgtgctcttcaccagcgcacgcaaatttgacggcaaa
gacttccgctggatctcctctggagagtacatccagatgtcaggacgtgccggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggctgatcctctgaacagtgcgttccacctgacctac
aacatggtgctcaatctactgcgtgtggaggagatcaacccggagtacatgctggaaaaa
tccttctaccagttccagcactatagagccgtgcctggcgttgtggagaagatgaaaaag
ctggaggaggagtataatgcgatacgaatccctaatgaagagagcgtggtgacctactat
aagattcgtcagcagctggccaaactgggcaaagaaattgaggaatttattcacaaacct
agatactgcctgcccttcctacagccaggcagactggtcagggtgaaaagagaagatctg
gattttggttggggtatagtcgtcaatttccaaaagaagacaaatgccaaggctggaggt
gctgaagttgacccgttgtttgtggtggaggttctgctccactgcagcaaagacagtgtg
aaaaatgcagccacggaggcagccaaaccggcaggcccaggagaaaagggcgagatgcag
gttgttcctgtgattctacatctcatcacttccattagctctgtgcgcctctacatcccc
aaagacctgcggccgttcgacaaccgacagagcatgctcaaatccgtacaggaggtgcag
aaacgtttcccagatggcgttcctctgctagatcccatagacgacatgggaatcaaggat
ccagcgctgaagaaggtcattcagaaggtggaggcgtttgaacacaggatgtacacacac
cccctgcacagcgaccccaacctggaggccgtttacactctgtgcgagaagaaagcgctg
attgcaggcgacattaaagcggcgaagcgtgagctaaagaaagcacgcaccgtgctgcag
atggacgagctaaagtgcaggaagcgtgttctgcggcgcttgggattcgccacttcctct
gatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgttg
ctgacagagatggtgtttaatgggctgttcaacgacctgacggcggagcaggccaccgcg
cttctcagctgctttgtcttccaggaaaacgctaacgagatgcccaaactgacagagcag
ctggccggaccactgcgtcagatgcaggaatgtgccaagcgtattgctaaggtgtccgca
gaggccaagctggacgtggatgaggacacgtatctgaaccagttccgcccacacctgatg
gatgtggtctacacctgggccaacggctcctcattctctcagatatgcaaaatgacagac
gtgtttgaaggcagtattatccgctgtatgcgcagattggaggagctcttgaggcagatg
tgccaggcggccaaagccattggaaatacagagctggagaataagtttgccacgggtata
acgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
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