Labeo rohita (rohu): 127172483
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Entry
127172483 CDS
T09007
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127172483 (smg8)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127172483 (smg8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
DUF2794
Motif
Other DBs
NCBI-GeneID:
127172483
NCBI-ProteinID:
XP_050977723
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All DBs
Position
10:4311746..4316737
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AA seq
916 aa
AA seq
DB search
MAVPKNIGALLQSEIIEDAADKDEGVCVLGIFGKSAMQPGSAKDSLINTLADKHVFSLFG
SDDTDSPGGGTSIQAYYNQENRVLYLVLISVFDNRQLIRACESLTAGLGHAEAHEFWKGA
EKDHCLQLLYLFSLCHVLLLVHPTCSFDVTYDRMFRALDALRQKALPLLRSAIKDSQVSK
EWKLNCRPCPPRLLFVFHMNGALRVGSSGTGNGTDGSGGDKPKKHSPRRRMQHALEDQIY
RIFRKSRVLTNQSSNCLFTVPANQAFVYVVPGPDEDPIGSLLGHLRSNCVLRESEGGTPA
PRQRRYQQMRHSNRQPSFNVESSLSSGGQLVDCTLKEFLWQHVELVLTKKGFDDSVGRNP
QPSHFELPTYSKWVHIAYKLYQVMIESSEDDAAEISLKVQGQLKVLEGFLDADAKFSENR
CQKALPLAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGVAFQRYALQLHEDCYKFW
SNGHQLCEERSLTDQHCVHKFHLLPKPGEKPEMDHNPPILYHNSRGRSTSSCNCGRKQSP
REDPFDIQAANYDFYQMLEEKCCGKLERINFPVFQASTPDPAPASDEVPRPGEVPPSGEA
DRLKEKETSTHTPGDSTSLSLALSLGQSTDSLGTYGDGAEGQEKRPSLVDRQHSTVEYLP
GMLHSGCPKGLLPKFSSWSLVKLGPAKAYNSLTGLEQPGFLPGSAFLLPWDVVIRSRSEE
DVGSLEPLDGGPASWPAPNKASAGKRGSAGGIGRGRRRDDVARAFVGFEYEDSRGRRFLS
SGPDKVVKVLGQGGPKEPATRCLNSDMPLYIPSPAQGRGIKPHYAQLARLFVVVPDAPLE
IVLNPQVQPGPPPCPIFHPEQPEVVLPPDGLWVLRFPYAYVTDRGPCYPPKENQPLANFR
VLRGILRANMTSSTPQ
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcccaagaacatcggagcactgttacaatcagaaataatagaagacgccgcg
gacaaagatgagggcgtttgcgtattgggcatatttgggaaaagcgcaatgcaaccggga
tcagccaaagactctctcataaacaccttagcggataaacacgtcttctctctctttggg
agcgatgacactgacagtccgggcgggggaacatccattcaagcctattataatcaggag
aaccgcgtgctgtatctcgtattaatatctgtttttgacaaccgacaacttattcgagcg
tgcgagtcattgacggcgggtttgggtcatgcagaggcgcatgagttttggaaaggagca
gagaaagatcactgtttacagcttctgtatctattctcgctgtgccatgttcttctgctg
gttcatcccacatgttcgttcgacgtcacgtacgatagaatgtttcgcgctttggacgcg
ctacgtcagaaagcgcttccactgctgcgttctgcaattaaagattcgcaagtatctaaa
gaatggaagttgaactgcaggccctgccctccacgtttgcttttcgtcttccatatgaac
ggtgcgctcagagtgggctcctctggcactggcaatgggactgatggttctggaggggat
aaacctaaaaaacactcccctagaaggcgcatgcagcatgctctcgaagatcaaatatat
aggatattcagaaaaagtcgtgttttgaccaaccagagtagtaattgtctctttacagtg
cctgccaatcaagcttttgtgtacgtagtgccaggaccagatgaggaccccatcggctct
cttctcgggcacctgcggtccaactgcgttttgcgagaaagcgaaggcggcacgcctgcg
cctcggcaaaggcggtaccaacaaatgaggcactctaacagacaaccctctttcaatgta
gaaagcagtctttcctcaggagggcagttggtggactgcactttaaaagagttcctttgg
cagcacgtcgagctcgtattgaccaagaaaggttttgatgacagcgtaggtcgcaatccg
cagccatcgcattttgagttgcctacttattccaaatgggtgcatattgcgtacaaactt
tatcaggtcatgatagagagcagtgaggatgacgcagccgaaatctccctcaaagtgcag
ggtcaactcaaggtgctggagggcttccttgacgcagatgcgaagttctcggaaaacagg
tgtcagaaagccttgccgctggctcacagtgcgtaccagtcaaaccttccccataattac
accaccacagtacataagaatcaactggcgcaggcactgcgagtgtacagccagcacgcg
aggggagtcgcctttcagagatacgccttacagcttcacgaggattgctacaagttttgg
agtaacgggcatcagctttgtgaggagcgcagtcttacggatcagcactgcgtgcataag
ttccatctgctgccaaagccaggagagaagccagagatggaccacaacccacctattcta
taccacaatagtagaggtcgctctacaagttcctgtaactgtggtaggaagcagtctcca
agagaagatccatttgacatccaggctgccaactatgacttctaccagatgcttgaggag
aaatgctgtggaaagttggagaggatcaatttcccagtgtttcaagccagcacacccgac
cctgctcctgccagtgatgaggtgcccagacctggagaggttcctccatcgggagaagct
gatcgcctaaaggagaaagagactagcactcacacacctggtgatagcacaagcctgagt
cttgctctaagcttgggccagtcaactgacagccttggaacgtatggtgatggagcagaa
ggacaagagaagaggccaagcttggtggacagacagcactccacagtggagtacctccct
ggcatgcttcattctggatgcccgaagggactgttgcccaagttctcgagttggtctctt
gttaaacttggtccagctaaggcctacaacagcctcactggtttagagcaacctggattc
ctcccaggctctgctttcctcttgccctgggatgttgtcattcggagccgatcagaggaa
gatgtaggatcgctcgagcctctagacggaggtccagcctcctggccagcaccgaataaa
gcatccgctggaaagcgaggcagcgctggaggaatcggacgagggcgtagacgagacgat
gtagctcgtgcttttgttggtttcgagtatgaggacagcagagggcgccgcttccttagt
tctggccctgataaagtagtcaaagtgcttgggcaaggcggaccaaaggaacctgcaacc
agatgcttgaattctgatatgcccttatacattccctctccagctcaaggacgagggatc
aagccacactacgctcaactggctcgccttttcgtcgtcgtcccagatgctcctcttgag
attgtcctaaacccacaggtccagccaggtccccctccctgtcccatcttccatccagag
cagcctgaggtggtgctgccccctgatggactctgggtgctacgcttcccttatgcctac
gtgacagatcgtggaccatgctaccctccgaaggaaaaccagccgttggcaaacttcagg
gtgctgagaggcattctgcgagccaacatgactagttcaaccccacagtaa
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