Labeo rohita (rohu): 127172592
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Entry
127172592 CDS
T09007
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127172592 (vldlr)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
127172592 (vldlr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Mucin
Motif
Other DBs
NCBI-GeneID:
127172592
NCBI-ProteinID:
XP_050977889
LinkDB
All DBs
Position
10:complement(20658648..20686057)
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AA seq
875 aa
AA seq
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MVTSILGLLILPVCLQLCGFSRGSRTECEQSQFQCGNGRCIPSVWQCDGDLDCSDGSDET
SCVRKTCAEVDFVCRSGQCIPKRWQCDGEPDCEDGSDESIEMCHTRTCRANEFSCGVGST
QCIPVFWKCDGEKDCDNGEDEINCGNITCAPLEFTCASGRCVSRNFVCNGEDDCGDGSDE
QDCAPSSCGPSEVPCGNNTCIPRSWLCDDDVDCQDQSDESPERCGRNPTPPAKCSPSEMQ
CGSGECIHRKWRCDGDPDCKDGSDEKNCSARTCRPDQFKCDDGSCIHGSRQCNGFRDCAD
GTDEVNCKNLTQCNGPDQFKCRSGECIEMSKVCNKVRDCPDWSDEPIKECNMNECLLNNG
GCSHICRDLTIGYECDCTPGLQLIDRKTCGDVNECLNPGICSQICINLKGGYKCECHNGY
QMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVAVDADFVQQTIFW
ADLGQKAIFSTVLDKEASHTKVIDNVQMPVGIAVDWIYKNIYWSDLGSKSIAVANFNGTK
RKVLFSSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGIDRQVLVETDIQWPNGIT
LDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGENEA
IYGANKFTGSDVTLLASNLNEPQDIIVYHELIQLSGTNWCNEKVENGGCSFMCLPAPQVN
KHSPKFTCVCPQGQTLTSDGLRCRPEAPSATPQDVGRVTTQPSHPKASAIPKVASEPVRA
EGNISTSIHEVNSSAKGSAAAWAILPVLLLAMAAAGGYLMWRNWQIKNKKSMNFDNPVYL
KTTEEDLNIDISRHSASVGHTYPAISMVNTEDDLS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattctggggcttctcattctgccagtatgtcttcagctgtgtggattt
tcgcgcggatcccgaacagaatgtgagcagtctcagttccagtgtgggaacggccggtgt
atcccgtctgtgtggcagtgcgacggcgacctggactgctcggacgggagcgacgagacg
tcttgcgtgaggaagacctgtgccgaggtggacttcgtctgccgcagtggccagtgcatt
cccaagagatggcagtgcgatggagagccggactgcgaggatggctcggacgaaagcatc
gaaatgtgccacacgaggacttgccgagcgaacgagttcagctgcggcgtcggctccacg
cagtgcataccggtcttctggaagtgcgacggtgagaaagactgcgacaatggggaggac
gagattaattgcggaaacatcacatgtgcccctctggagttcacatgtgccagtggccgc
tgcgtgtctcgtaatttcgtctgcaacggtgaggatgactgcggggacggcagcgatgaa
caggactgtgctccttcctcctgcggcccgagtgaagtcccttgtgggaataatacctgc
attcctaggagctggctgtgcgatgatgacgtggactgccaggaccaatcggacgagtcg
ccagagcgttgcggccgcaaccccacaccgccagctaagtgttcacccagcgagatgcaa
tgcggctctggggaatgcatacacaggaagtggcgctgtgacggggatccagactgcaag
gatggcagtgacgagaaaaactgctctgcccgtacctgcaggcctgaccagttcaaatgt
gatgacggcagctgtatccatggcagccgacagtgcaacggattccgagattgtgcagac
ggcacagatgaagtcaactgcaaaaacttaacacaatgtaacggtcctgatcagtttaag
tgtcggagtggagagtgtattgagatgagtaaagtgtgtaataaggtccgtgactgtcct
gactggagtgatgaacccatcaaagagtgcaatatgaacgaatgcctgctgaataacgga
ggttgctcgcacatctgccgcgacctgacgattggctacgagtgtgactgcactccagga
ctccagctcatcgatcgcaagacctgcggtgatgtcaatgagtgcctcaaccctggtata
tgcagtcaaatatgtataaatcttaaaggaggatacaaatgtgagtgccacaatggctac
cagatggaccccaccactggagtgtgcaaggctgtaggtaaagagccctgtcttattttc
accaatcgaagagacatccgtaaactagggctggagcgccgtgaatatactcagattgtg
gagcagctgcggaacacagtagctgtagatgctgactttgttcagcagacaatattctgg
gctgacctggggcagaaggcaatttttagcacagtattggataaagaggcaagtcatact
aaagtgattgacaacgttcagatgcctgttggcattgcagtggactggatttacaaaaac
atctactggtcagacctgggcagtaagagtatagcagtggccaacttcaatgggaccaag
aggaaggtgctctttagcagtggcctgaaggaaccagcctctatagctgtggatcctcta
tcaggattcctgtactggtcagactggggtgagcctgctaagattgagaagtctggtatg
aacgggattgacagacaagtcctagttgagacagacattcagtggcccaatggaatcact
cttgatctgatcaagggcagactctactgggtggattcaaagctgcacatgctttgtagt
gtagacttgaacggagacaaccgccggaaggtgctgcagtcaccagactacctggcccac
ccttttgctcttactgtttttgaggatcgagtgttctggacagatggtgagaatgaggcc
atctacggcgcaaacaagttcacaggatctgatgtaacactgctggccagcaacctcaat
gaaccccaagacatcattgtgtaccatgagctaattcagctgtctgggaccaactggtgt
aacgagaaagtggagaatggaggctgttccttcatgtgcctgccagctccacaagttaac
aaacattcccctaaattcacctgcgtgtgcccgcagggccaaacactcacctcagacggc
ctgcgctgcagaccagaggcaccttctgccacccctcaggatgtagggagggtgaccact
caacccagtcaccctaaagcatctgcaataccgaaggttgcctctgaaccggttcgggct
gaaggaaacataagcacttccatacatgaagtaaattcatcagccaaagggtctgctgct
gcctgggctattctacctgtgttattattggccatggccgctgcgggtggctacttaatg
tggcgcaactggcagatcaaaaataagaagagcatgaacttcgataatccagtatatctg
aagaccacagaggaagacctcaatattgatatcagcagacacagtgcttctgtaggccac
acgtaccctgctatttcaatggtaaacacagaagacgacttgtcataa
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