Labeo rohita (rohu): 127172647
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Entry
127172647 CDS
T09007
Symbol
col9a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127172647 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127172647 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127172647 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127172647 (col9a1a)
Proteoglycans [BR:
lroh00535
]
Extracellular matrix (ECM) proteoglycans
Others
127172647 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127172647
NCBI-ProteinID:
XP_050977936
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Position
11:complement(6889329..6904863)
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AA seq
687 aa
AA seq
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MAHAGTLRASLLLILLQLVLIISAQRGPVGPKGLPGSPGLPGFSGVDGIDGERGPGPGPV
GPPGLDGDNGKDGLNGLPGKPGADGLTGPRGDPGPVGPPGQKGEPGEPGARGAPGVGEDG
EAGADGEDGLPGELGKVGPPGSRGLRGPVGAQGLAGPRGPPGVWDGKELCPNACTSGLTG
YTGLPGMKGHKGIKGESGEPGRQGHKGEEGDQGAPGDQGAQGLPGPQGLRGITGMMGPKG
DRGPRGNVGGLGPQGIQGAPGDRGQRGKVGENGPKGSQGPLGLQGLVGLPGPKGETGLPG
VDARDGIPGLPGVKGLPGKVGSPGEAGLQGFPGLPGISGAKGHMGAKGNTGDPGVAGLIG
NNGKTGERGEQGEVGPVGPRGGPGERGVRGPDGPAGMPGARGAKGDPGLPGLPGPAGFIG
QKGDRGAVGLTGPKGEQGPPGEEGTPGDKGDVGDEGEPGEKGSTGKPGDAGNKGPEGGRG
QHGPEGPAGEPGPRGMQGDRGVPGLPGGQGRPGRAPTDEHIKQVCMRVLHGQLAQLAASL
TRPESGVSGLPGPPGPPGPPGPAGDNGFPGHPGSRGLPGLKGPPGLLGRKGPKGDQGDRG
DRGPTVVGPKGIPGPPGLPGDPGTPAYGSNGRDGLRGPVGAPGMPGVPGPPGPPGPTGYC
ESSQCVLQAVASSVSVKESNMKGPDGL
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgccgggactctccgcgcgtccctgctgctgattttactgcagttagtgctg
atcatctctgcacagagggggccagttggtccaaaagggctacctggatctccagggctt
cctgggttttctggtgtcgacggcattgatggtgaaaggggacctggccctggcccagtt
ggccccccaggccttgatggagacaatggcaaggatggattaaatggccttccaggaaaa
ccaggcgcggatggtttgactgggccccgtggtgaccctggccctgttggccctcctgga
cagaaaggtgaacctggtgagccgggagcaaggggagcccctggtgttggagaggatggt
gaagctggtgctgatggggaagatggattacctggagagctaggcaaagttggacctcct
ggaagtcgtggactgagaggtcctgttggtgcccaaggtctggcagggcccagaggtcct
cctggagtctgggatggtaaggagctgtgcccaaatgcctgtacttctggcctgactggt
tacaccggtcttccaggcatgaagggccacaaaggtatcaaaggtgaatcaggtgaacca
ggcagacaaggacataagggtgaagaaggagaccagggagcacctggagaccaaggagca
caaggacttcctggtccacagggtctcagaggaatcacagggatgatgggccctaaaggg
gacaggggacctcgtgggaatgttggcggcctgggccctcagggtatccagggcgctcct
ggtgaccggggtcaaagagggaaagtaggtgagaatggaccaaaaggatctcagggacct
ctggggttgcagggacttgtgggtttacctggaccaaaaggagagactggtttgcctggg
gtggacgctcgtgatggtattccaggactgcctggggtgaagggtcttccagggaaagtt
ggctcgcccggtgaggctggacttcagggatttccaggtttgccaggcatttcaggagct
aaaggccacatgggtgcaaaaggaaataccggtgatccaggtgtggcaggtctgattgga
aataacggaaaaacaggtgaacgtggcgagcagggagaggtgggaccagtcggaccaaga
ggtgggccaggtgagagaggagtgagaggtcctgatgggcctgcaggcatgccaggtgcg
aggggagctaaaggagatccgggccttcctggtcttccagggcctgctggcttcattggg
cagaaaggcgacaggggtgctgttggtctcactggtccaaaaggagagcaaggaccacct
ggtgaagagggaacacctggagacaaaggagatgttggtgatgagggagagccaggcgag
aaaggatcgacaggaaaaccaggagatgcaggaaataaaggcccggagggtgggcgtgga
caacatggacctgagggcccagcaggagagcctggcccgagaggcatgcaaggagacaga
ggagtacctggactgcctgggggacagggacgaccaggccgagcaccaacagatgaacac
atcaagcaggtctgcatgagggttttgcatggacagcttgcccagttggcagccagtctg
acaaggccagagtcgggcgtctctgggttgccaggtcctcctggtccccctgggcctcca
ggccccgctggagacaatggcttccctgggcatcctggaagcagaggattgccaggtctc
aaagggcccccagggctcttaggaaggaaaggacccaaaggtgaccagggtgatagggga
gacagagggcccacagtggtggggcctaaaggtatacctggaccacctggactcccaggt
gaccctggaacaccagcatatggcagcaacgggcgtgacgggctgagaggaccagtaggt
gctcctggaatgccaggtgtgcccgggccacctggtccccccggccctactggatactgc
gagtcatctcagtgcgtacttcaagcagttgcaagttcagtgtctgtcaaagaatccaac
atgaagggaccagatggtctatga
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