Labeo rohita (rohu): 127172675
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Entry
127172675 CDS
T09007
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2 isoform X1
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh00310
Lysine degradation
lroh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
127172675 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127172675 (prdm2b)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172675 (prdm2b)
Enzymes [BR:
lroh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
127172675 (prdm2b)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
127172675 (prdm2b)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
127172675 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2HE
zf-C2H2_jaz
Zap1_zf1
zf-C2HC_2
zf-C2H2_ZNF462_1st
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
127172675
NCBI-ProteinID:
XP_050977963
LinkDB
All DBs
Position
11:24750945..24775725
Genome browser
AA seq
1757 aa
AA seq
DB search
MALPQGTYETLDDIPAHVWKGLPNSMKLGPSAVNPNRIGVWASRLIPKGKRFGPFVGERK
KRSQVTSNVYMWEVYFPAWGWMCVDATDPMKGNWLRYVNWARSSQEQNLFPLEINRAIYY
KVLRPIGPDEELLVWYNGEDNPEIAAALEEERTSNLSKKSSPRAKRARRKLSEKARQADL
GGFCEPKKSSAAEPSITEMRDSEEGLNGEEGPSSPSELQQENAASQSSSTENENPVQSHT
TDMNQREGSDGENADDDGQLQQPQLIQSPQHPSEAESVDGNEKSLLHLHSGSPAEESSES
PLCDTECISSLANPELEAEGDFEDDPQGETYPCQHCERHFSTKQGLERHTHIHTTSNHQT
HTFKCRYCAKPFGSQVGRRRHERRHENGSKTLNRPGSLSGTSFLHSPTAPSDSATSGSAS
SPSHSVVMNTQNGPPQQTSDSLKKEPGAEFDRPFILDESGESKELHPCKYCNKAFGTHTN
MRRHQRRIHERHLMPKGVRRKGMLLQDGSSQQQQHEQGQPVSLQEESPSASPPPIYVPSV
ETEDEGEREECMVDISNNISENLSHYIDGKIPSTSTVSNCEVIEVDSSTAALFGLDALLL
SPKQVTHTLKVETRTCPVKEVSCVAQTAAKRRTATPPMLPAVKMETETASSSSSLSSPSS
QSSLLVGNIFSQSTETLAFQKEKTVYLSPKLKQLLQAPDGQKPAIGLITDSHRLTTPLSV
TSLPAVQGKFKRRTASPPTTSQSSPPQKTESVISATGGSCSLKVPKIESHCMAQSWNLSS
QDHGDAVSLTGKDWSPSRSGGNSCNQQPLDLSSSFTKKDNSVSKGSGEAVLDLSMSRKSP
VDHEAKTSSATLMPHVKRKKPNTSILEKVLMNEYAGLNSPGDEGSNPVGSPDALSSSESA
TGVGPSSPGSGSERLPCESTSPPSLTPMTINPSSPSSSSIASSTPPPPVLPTIPSPPPLS
SPHFRMSDASSPAPFPVLSPKMSPKADDSLEEALDSSALTESCHDALNSIVNESDQTAEQ
LDPAISPLPQDAKRHCTADSSSKSETLLEGSTHDSKPQFLQNADQAGSSHLKWDTASETS
QSHSCEGTPPQDLNNKTEGRHKSKSSLSTVQSAPKKESSSLTFLSELHSPQKSSVADEKL
FVEDTGKTEGPVDITANGSNASPGSPPRSSDEFETPERETFVKNFVCNVCKEPFRSIKDL
SGHIIEHASEWPFKCEFCVQLFGNATALLEHRSSLHGVGRIYICSICSKEFAFLCNLQQH
QSDLHPSQSCTHTAVENGKLRPQNYTDPAYANVEKDTVLDSIAGATSEDSSEERNSDTKK
VDEEENGHEDPTEELYTTIKIMASEAGKPKGPDVRLGINQHYPSFKPPPFPYHNRTPDGS
VASATHFTTHNIPQTFSTAIRCTKCGNSFDNMPELHKHILVCANASDKRRYTPKKNPIPL
KQVVKQSPNGLLTTTGASSGLNAFRRMGQPKRLNFNQDITSKAKLSALNKKKNQLVQKAI
SQKNKSAAFVKKPTTRVKEEETHKVHACPYCSREFTYPASLNKHIACSCPQRPVAKKLKK
GALMPQDKNRSLRSRATDSEIKQEPVSGPSAKPLGKTRARSSEPVESEAPPASKGKAPQV
RTKRLTSNADNTAPQAKKSKKSIEPLTSITPALTDDSSTRQPSKMQRSKEVVVKKEVVVK
KEVVVKKEVVVKKEAGVKQTQSKKEERFSTRTRERKGGPVTRSVQMASTSAPLEVKTEDL
PNHEPGQSEDSPLKLAR
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggctttgcctcaaggaacatatgaaaccttggatgacatcccagcccatgtgtggaag
gggctgccaaacagcatgaagctgggaccgtcagctgtcaaccccaatcgcattggggtt
tgggcgtctagattaatacctaaaggcaaaaggtttggaccatttgtaggagaacgaaag
aagagatctcaagtgacaagcaatgtttacatgtgggaggtgtattttccagcctggggg
tggatgtgtgtagatgccacagatccaatgaaaggaaactggttgcggtatgtgaactgg
gcacgctcttctcaagaacaaaacctcttcccactggagatcaaccgagctatttactac
aaagtgttaaggccaatcggaccggacgaagaacttctcgtgtggtacaatggggaagac
aatcctgagatagcagctgcattagaggaagaaagaactagcaacctgagcaagaagagt
tcacctagagcaaagcgagcaaggaggaagctgtcggaaaaagccaggcaggctgatttg
ggcggattctgtgaaccgaagaaatcgagtgccgctgaaccctcaatcacagagatgcgg
gactcggaggaagggcttaatggtgaggaaggaccctcttcaccttcagagttgcaacag
gagaatgcagcttcccagtcgtcctctacggaaaatgaaaaccctgtccagtctcataca
acagacatgaaccagagggaaggatcggatggggaaaatgcagacgatgatggacagctg
cagcagccacagttaattcagagcccacagcacccctctgaggcagaatcagttgatggg
aatgaaaaatctctcctgcatttacattcgggcagccctgcagaagaaagctctgagagc
ccgctgtgtgatacggagtgtatatcttctttagcaaatcctgagttagaggcagagggg
gattttgaggatgaccctcaaggagaaacatatccctgtcagcactgcgagcgccatttc
tccaccaaacagggcctggagcgccacactcacattcacactacttcaaaccatcaaact
catacatttaagtgccggtactgcgccaagccctttggctctcaggtaggcaggcgcaga
catgaacgcagacatgaaaacgggagtaaaactttaaataggcccggatcacttagcgga
acttcgttcctccacagtcctacggcacccagtgattctgctacctctggcagtgcatcc
tctccaagccattcagttgttatgaacacacagaatggtccacctcagcaaacctccgac
agtttgaaaaaagagcctggtgctgaatttgaccgaccttttatattggatgaaagtggg
gagtcaaaagagcttcatccttgcaagtactgtaacaaggcttttggcacacacaccaac
atgcgcagacaccagcgcagaatccacgagcggcatctaatgccgaaaggtgtgcgtcgg
aaaggtatgctcctgcaggatggctcttcccaacagcagcagcatgaacaaggtcagcct
gtttcactccaggaagagtcaccaagtgccagtccaccaccaatttacgtgcccagtgtg
gagaccgaggatgagggagaaagagaggagtgtatggttgatatctctaacaacatttct
gaaaatctcagccattacattgatggaaagatcccatctacaagcacagtgagcaactgt
gaggtcattgaggttgattcaagcactgcagcgttgtttggccttgatgctctcttactt
agtccaaaacaagttactcacactcttaaagttgaaacacggacttgtccagtcaaagaa
gtttcatgcgtagctcagacagctgctaaaagacgaactgctacaccaccaatgctgcct
gctgtgaaaatggaaaccgaaacggcatcctcctcttcctccctgtcctccccttcctct
cagtcctcattgttggtaggaaacattttctcccagtcaactgaaacgttagcttttcag
aaggagaaaacagtttatctctctccgaaactcaaacaactactacaggccccggacgga
cagaaaccagccataggtctaattacagatagccatagattgaccaccccgctttccgta
acttcactgcctgctgtccaaggaaagtttaaaagaagaactgcctcccctcccacaact
tcacagagtagcccgccacaaaaaactgaaagcgtaatctctgcaactggaggttcatgt
tctctgaaagtgccaaagattgaaagccattgcatggcgcagtcctggaatttgtctagc
caagatcatggggacgccgttagcctaacaggaaaagactggtctccttcaagaagcggg
gggaattcttgcaatcagcagccgcttgacctttcgagttccttcactaaaaaagacaat
agtgtaagcaaaggctctggagaggctgtgcttgacttgagtatgagccgtaaaagtcct
gtcgatcatgaagcaaagacaagctcagccacacttatgccacatgtgaaaagaaagaaa
cccaataccagcattttagagaaagtcttaatgaatgagtatgctggcttaaactcacct
ggggatgaaggatccaaccctgttggaagccctgacgctctttcgtcttctgagagtgcc
acaggtgttggcccttctagtcccggatcaggatcagagcgccttccttgtgaatcaacc
tctcctccctctctgacccctatgactattaatccatcctctccatcttcatctagtata
gcatcatctacaccccctcctccagtcttacccactatcccatcacctccacctttatca
tcgcctcattttcggatgtcagatgcttcatcacctgctccgtttcctgtgttgtcccct
aaaatgtcccccaaggcagatgatagtttagaggaagctttggattcgtctgctttaaca
gaatcatgccatgatgcattaaattccattgttaatgaatcagaccaaactgctgagcag
ttagaccctgcgatttctccactgcctcaggatgcgaaaagacattgtacagcagattca
tcttcaaagtcggaaacactacttgagggctcaacccatgattctaagcctcagttttta
caaaatgcagatcaagcaggttcttctcacctaaagtgggatactgcttctgaaaccagc
caaagccattcctgtgaaggaactccccctcaagacctcaataataaaacagaaggcaga
cacaaatcaaagtcttctctttctacagtacaatcagctcctaaaaaggaatcatcctct
ctgacattcctcagtgaattgcattctcctcagaagagttcagtggctgatgaaaagttg
tttgtagaggatacagggaaaacagagggtccggttgatataaccgcaaatgggagcaac
gcttcacctggttctccacccagaagttctgatgaatttgagacaccagagcgggagact
tttgtcaagaattttgtgtgcaatgtctgcaaagagccatttcgctccatcaaagacctt
agtggccatataatagagcatgcgtcagagtggccttttaagtgcgagttttgcgtgcag
ttattcggtaacgccactgcgctcctcgagcaccgctcctctctccatggtgtgggaaga
atttatatttgctccatttgctcaaaggagtttgccttcctctgcaatctccagcaacat
caaagtgacctacatccaagtcagagttgcactcacactgccgtcgaaaacgggaagctc
agacctcagaattacacggatcctgcctacgcaaatgtggagaaagacaccgttcttgac
tcaattgctggagctacctctgaggattcttctgaggagcgcaacagtgacactaaaaag
gtggatgaggaggaaaacggccatgaggaccctacagaagaactatacactacaataaag
attatggcatctgaggcgggtaaaccaaaaggtccagatgtacggcttggcattaatcaa
cactaccccagctttaagcctccacctttcccgtaccacaaccgaacacccgatggctcg
gttgcttccgccactcatttcaccacacacaacatcccccaaacatttagcactgcaatc
cggtgtaccaaatgtggaaacagctttgacaacatgcctgagttgcataaacacatatta
gtttgtgctaatgctagtgataaaaggcgctacacccctaagaagaatccaattcctctt
aaacaggttgtgaaacagtctccaaatggtcttcttaccaccacaggagcttcttctggg
ctgaatgctttccgcaggatgggtcaaccaaaaaggctcaactttaaccaagatataacc
tccaaagcaaagttatcagccctaaataagaagaaaaaccagcttgtccagaaagccata
tcccagaagaacaagtctgctgcctttgtaaagaaaccgacaacccgggtaaaggaagag
gagactcataaggtccatgcatgtccatactgtagtcgagagttcacatacccagccagc
ctcaataagcacatcgcttgcagctgtccacaaagacctgttgccaagaagttgaaaaaa
ggagcactgatgcctcaagacaaaaacaggagtctccgaagtcgagccactgactctgaa
atcaaacaagaaccagtttctggaccaagtgcaaagcccttggggaagaccagagcccgg
agctctgagccagttgagagtgaagctccgccagcaagtaaaggaaaagcacctcaggta
cgtacaaagaggctaacctcgaatgcagacaacacagcgccacaagctaagaaaagcaaa
aagagcattgagccattgacttccataactcctgcacttactgatgactcttcgacacga
cagccatctaaaatgcaacgatctaaggaggtggttgttaaaaaggaggttgttgttaaa
aaggaggtggttgtcaaaaaggaggttgttgtcaaaaaggaggctggtgtgaaacagacg
cagtctaagaaagaggaacgtttttcgacaaggacacgggagagaaaaggtgggccggtg
acacgcagtgtacagatggctagtacttcagctcctttggaagtgaagactgaagacctc
ccaaatcatgaaccgggacagtctgaggattctccattgaagctagccaggtag
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integrated database retrieval system
