KEGG   Labeo rohita (rohu): 127172692
Entry
127172692         CDS       T09007                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    127172692 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lroh03019]
    127172692 (cstf1)
Messenger RNA biogenesis [BR:lroh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     127172692 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 CSTF1_dimer WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_NWD2_C Ge1_WD40 PROPPIN Beta-prop_SPT8 Beta-prop_WDR75_2nd DUF7099 Frtz
Other DBs
NCBI-GeneID: 127172692
NCBI-ProteinID: XP_050977990
LinkDB
Position
11:23670103..23675987
AA seq 431 aa
MFRPKPTLKDRQHLYQLIISQLLYDGYTTIANSLISEVKPQSVVSPSEQLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPLEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTICGVCYNPSANSYVTCSKDGSIKLWDGVSNRCVTTF
EKAHDGAEVCSAVFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQTHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtttcggcccaagcccacactgaaagacagacagcacctttaccaactgatcatcagt
cagctgctgtatgacggctacaccaccatcgccaacagcctgatcagtgaggtgaagccc
cagagtgtggtgtctccatcagaacagctcatgcagctggccaagataggaatggagaac
gatgacagtgcagtacagtacgccattggccgctcagacaccgtggcgcctggtgtgggc
atcgacctggagtttgatgcagacgtgcagacaatgtctccagaagcatcagagtacgaa
acctgctatgtgacgtcccataagggtccgtgccgtgtggccacctacagccgtgatggt
cagcttatagcgacaggctctgctgatgcctcaattaagattctggatactgagcgcatg
ctggccaaaagcgccatgccgctggaggtgatgatgaatgaaacagcccagcagaacatg
gagaaccaccctgtgatcagaaccttgtacgatcatgtggatgaggtcacatgccttgct
tttcacccgaccgaacagatcctggcctctggctctcgtgattacaccctcaaactcttt
gattattcaaaaccgtctgcaaaaagagccttcaagcacatacaggaagctgaaatgttg
cgttccatctctttccatccatctggggatttcttactcgttggcacacagcacccaacc
ttgcgtctttatgacgtcaacactttccagtgttttgtgtcctgcaaccctctggatcag
cacacagacaccatctgtggagtctgttacaatcccagcgctaacagctacgtcacctgc
agcaaagacggcagcatcaagttgtgggacggagtgtcaaaccggtgcgtgaccacattt
gagaaagcccacgacggcgctgaggtctgctcggccgtcttctccaagaactccaagtat
attctgtccagcgggaaggattcggttgctaaactctgggaaatttccacaggccggact
ttggtcaagtacacaggtgcgggtctcagtgggcgacagacacaccgcactcagggtgtt
ttcaaccacacggaggactatgtgctgctgccggacgaacgaaccatcagcttgtgctgc
tgggattcacgcacagctgagaggaagaacctgctctcactaggccacaataacattgtg
cgctgtatcgtacactcgcccacgaaccccggcttcatgacctgcagcgatgacttcaga
gcacgattctggtatcgtcgcaccaccactgactaa

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