Labeo rohita (rohu): 127172719
Help
Entry
127172719 CDS
T09007
Symbol
nwd1
Name
(RefSeq) LOW QUALITY PROTEIN: NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127172719 (nwd1)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
127172719 (nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
NACHT
Beta-prop_EML
nSTAND1
AAA_16
DUF4062
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
NPHP3
Beta-prop_TEP1_C
Beta-prop_Nup120_160
AAA_22
NPHP3_N
Beta-prop_CAF1B_HIR1
NPHP3_hel
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
AAA
Beta-prop_LRRK2
ATPase_2
Beta-prop_SCAP
Beta-prop_WDR75_1st
Bac_DnaA
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
127172719
NCBI-ProteinID:
XP_050978030
LinkDB
All DBs
Position
11:1791506..1806808
Genome browser
AA seq
1621 aa
AA seq
DB search
MAVVGMSEALGLEALRGQSADALQPVSRMVRVFISSTYSDMKNERNAFWEKAYSELQTHC
QSLGLIFEVVDFRCGVRDVLTADHLTTELSIKEIESCQRISDGPTFIALLGNQYGHRPIP
RLVPETEFELLVSKLPKDSESLKLLNKWFSKDSNSVPPTYILQPITAHYPHYNDRGSESG
QLRDNDVISWNLTESRLLQALRTAAQQAERDGDISVDQKHKFFKSVLEYEMEHGFLKTQK
DASSVLFFRELPRLSKRANKKNFAKFLLDVTADGLLDTEARELLADLKQRVCNTGRLQPL
CMELSKGAIDPSRKEHKEYLGKLCEQVTSQMKELIGRNALQNSGTSGTVEPGWSWLKQEI
FHHAMLGEERCSVFKGRDSILGKICITLWESTNARHEPLLVHGPSGVGKTALLCKLAQEI
RGVVDHRGVVVLRLLGTSPLSSDVDSVLRGVCLQVCGALGLQFPYPHISNTHKELVRFFH
SMLEDVSKQGDTLLLILDSLDQLLETSKPHQLDWIPKAIPPNVQIVLSISDDYVEKCKSL
VSAEENIFGVELLTDDQGKDIIDAYMTAAGRKLTSEQLETILNRFQQSRSPLHLKLMLDM
AKQWSSYTSMSNVCLGISAQEVMTQFVESLEENHGKKLVSHALCFILLSRNGLSEAELQD
VLSLDNDVLAEIYKYWLPPSHTLLRFPRLHWSRLWHDLSAHLTERWEGGVILLGFTHRQF
AELVRKRYLSRDMKADMHAILAEYFSGRWSQGQLRPILLPSLSTLLNADRKVPVQPLWFT
GEVANMRKLHELPYHLAHAGKWEELRQSVLGTLDWLCCKTLRCGVSCVIQDLVVCTDLTD
CPEIQMLKETFLLLKPSLDFSDGRVDPSLLVTEIFSRLQGLTDLYPSMIGQLCSQCADWF
GSCTDPVLVPKCSFFQAPGGPLKSTLTGFTKGVKAVVLCSKRELLVAGSEDGLIIVWSLN
HLQTLHTLSGHTAGVLSLKLMDKTNHCLSTGLDGTLRKWCLISGQQLFCITDAVSVQTHT
PTHVHMIEERKIIITNPSSLVKAWHLDTAEPLYEVTAGVCSVLGVVGDVVACICSEGTLC
FYDISTGVQHSLTPLPCPAGHHNITCSLTLTRYSKILIAFGEGRLHSVWSHGIESMVDLP
SPALFLRTSEDEKLLFAGCDRTLCVFTVTLTSMQKILDLHHDASVLCAVSSTEGSEIITS
AQDRIIRVWGVTTGALLDWFGVMDSAVSSLAVHQRTIISASIITNQLKVWQLDYNNKHRS
KTFIPAYCPLVVLSKDGDTVFYVKEGNNTEVFTWSCSEGLRSGIMDVSSEVCCMELAQQK
RLLFCGLRTGTILIYPLDFAPETLCLPPPENLPMVRSMAISPREDRIAVAYEDAVCLFEI
TSRDSFPCVEGPFESYSLCLLHSPISAMALLSDCRLLYGTFGGEVVIYDFKSATAAEMDH
HGAAITCITMSNWDAQALIGSQDCVQKLWNLSPVLLNHTMEYKGFYFEGVLCAVFSINDK
YVFTGSLDKTIKVWDVSTGCLLYIQFVYSPVIKMMPHKDGFVAVSQHGSFIKEGFHCPDA
LQPGYNPLRNFRAHYRVTSRVKSLNAPHTVISELPDYNPAQFNFIGIGLMKSKPSNTCVL
L
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggtggggatgagcgaagctcttgggttggaggctctgcggggacagagcgct
gatgctctacagcctgtttccagaatggtgcgggtgttcatcagctccacatactcagac
atgaaaaatgagagaaatgcgttctgggagaaggcctattctgagttgcagacccactgt
caaagcttgggtctcatctttgaggtagtggatttcagatgcggagtgcgtgacgtcctc
acagctgatcacttgaccactgaactgagcattaaagaaatcgaatcctgtcagagaata
tcagatggcccaacttttattgctctgctcggtaatcagtacggtcatcgccccatccca
cgcctcgtaccagaaacggagttcgagttgctggtatcaaaacttcccaaggattcagag
agtttaaagctccttaataaatggttctccaaagacagtaactcagtcccacccacatat
atcctccagccaatcacagctcactatcctcattacaatgataggggctctgaaagcggg
cagttgcgtgataatgatgtcatatcctggaatctgacagagtcacgattgctgcaggct
ctccgcacagctgctcaacaggctgagagagacggggatatcagtgttgaccaaaagcac
aagtttttcaaatctgtcttagaatatgagatggagcacgggtttctcaagactcaaaag
gatgcatcatctgtgctgtttttccgtgaactgcctcgacttagtaaaagagccaacaag
aaaaactttgcaaagtttcttctggacgtcacagccgatggcttgctggacaccgaagcc
cgggagctcttggccgacctaaagcaacgcgtctgcaacacaggtcgcctccaacctctc
tgcatggagctcagcaaaggagctatagacccaagccgcaaagaacacaaggagtacctg
ggaaaactgtgtgagcaggtaacatcccaaatgaaagaactgatcggcaggaacgctctg
caaaattcaggaacttctggcacggtagaaccaggatggtcttggctgaaacaggagatt
ttccatcacgccatgctgggcgaggagaggtgctctgtgtttaaaggaagggacagcatt
ctgggaaagatctgcattacactctgggagtccactaatgctcgccatgaaccccttctg
gttcatggaccttcaggggtcggtaaaacagctctgctctgcaaactggcacaggagata
cgaggcgtggttgaccatcggggagttgtggtgctgaggttgctgggaacgtctccactc
agctcggatgttgactctgttctcagaggcgtttgtcttcaagtgtgtggagctttaggg
ctgcagttcccttatccacatatttccaacacgcataaagagctagtccggtttttccat
tccatgctggaagacgtgtcaaaacaaggagacacactcctactcattctggactccttg
gatcagctgttagagacaagcaaacctcaccaactagactggatacctaaagcaatccct
cccaatgtacaaatcgtactctctatttctgatgactatgttgagaaatgtaaatctttg
gtttcagcagaagaaaacatttttggagtggaacttctcacagacgatcaagggaaggac
attattgatgcctacatgactgcagctggacgcaagctgacctcagaacagttagagacc
atcttaaacagattccagcaaagcagaagccctttgcatctgaaactcatgctagacatg
gccaaacagtggtcctcctacacctccatgtctaatgtttgcctgggcatctctgcacag
gaagtgatgacacagtttgtggagtcacttgaggagaatcatgggaagaagctagttagt
catgctctgtgcttcatcttgttatcaagaaatggtctatcagaggcagaattacaggat
gttctgtcattagataatgatgttctggccgaaatttataagtactggcttcctccaagc
cacacacttctacgcttcccacgacttcactggtcacgtctttggcatgacctgagcgct
catctcacggagagatgggagggtggtgtaattctgctgggtttcacccacaggcagttc
gcagagctggtaaggaagagatatttatcacgcgatatgaaagctgacatgcacgccatc
ctcgctgagtatttctcaggacgttggagtcaggggcagctcaggcccattcttctgccc
tcactaagtacactgctcaatgctgacagaaaggtaccagtccagcccttgtggtttact
ggagaagtcgccaacatgcggaagcttcacgaactgccctatcacctcgctcatgccggc
aaatgggaggagctacgccagtcagtgcttggcactctggactggttgtgctgtaaaact
ctgcggtgtggcgtgagctgtgttattcaggaccttgtcgtttgcactgatctcactgac
tgtcctgagatacaaatgctgaaagagacatttctgcttcttaagccctcgttagatttt
agcgacggccgcgtggatccctcacttttggtgacagagatcttctccagactgcagggc
ctcactgatctctacccctccatgattggtcagctgtgttctcagtgcgcagactggttt
ggttcctgtactgacccagtgcttgtgcccaaatgcagcttttttcaggcccctgggggc
ccactgaagagcaccctcacagggttcacgaaaggggtgaaggctgtcgtgctgtgctcg
aagagggagctgctggtagcaggatcagaggatggactgatcattgtctggagtctaaac
catctacagacccttcacactctttctggacacactgcgggggtactgtccctgaagctg
atggacaaaactaatcactgtctgtctactggactcgatggcacactaagaaaatggtgt
ctgataagtggacaacagcttttctgtatcactgacgcagtgtctgtccaaacacacacc
cctacacacgttcatatgattgaagaaaggaagattatcataaccaacccaagcagcctg
gttaaagcttggcacttggacactgcagagcccctgtatgaggtgactgcaggggtttgt
tctgttcttggtgttgtgggagatgtagtagcatgcatatgcagtgaggggacgctctgt
ttttatgacatatccactggcgtgcaacattccctgaccccgctaccctgccctgctgga
caccacaatatcacatgctctctgacactcaccagatactccaagatactcattgctttt
ggagaaggccgtctacattcggtttggagccatggtattgagtctatggttgatcttccc
tctccagctttgttcctcagaacatctgaggatgaaaaactgctgtttgcaggatgtgac
agaacattgtgcgtgttcactgtgacgctgacttcaatgcagaagattctggatcttcat
catgatgcgtcagtcctatgtgccgtctcaagcaccgaaggcagcgaaatcatcacaagc
gcccaggatcggattatacgggtgtggggcgtaaccacaggagccttgctggactggttc
ggtgtgatggattccgctgtgtcctctttggccgtacatcagcgcacaattatctctgcc
tccattattaccaaccagctcaaagtatggcagctggactacaacaacaagcacaggagc
aaaactttcatcccagcatactgccccctagtggtcctgtcgaaagacggtgataccgta
ttctacgtgaaggaaggaaacaacacagaggtcttcacctggagctgttcggaaggtcta
cggtctggcattatggacgtttcctcagaagtgtgttgtatggaattagcccagcagaaa
cgtttactcttctgtggattacgtactggtaccatccttatttatccactagactttgct
ccagaaaccctgtgcctgccacctccagaaaacctaccaatggtgcgcagtatggccatc
agcccgcgggaggaccgaattgccgtggcatatgaggatgcggtttgtctgttcgagatt
acatcgagagacagtttcccctgtgtggaaggcccgtttgagagctactccctttgccta
ctgcattccccaatttccgccatggctctgctgtccgactgcaggctgctctatgggaca
tttggtggcgaagtggtgatctacgactttaagagcgccaccgcagccgagatggatcat
cacggtgcagccataacctgcatcaccatgagcaactgggatgcgcaagcgttgattggc
tctcaagactgcgttcagaagttgtggaatctgagtcccgtcttgctgaatcacaccatg
gaatacaagggtttttattttgaaggcgtcctatgtgctgtcttctcaataaatgataaa
tacgtcttcactggatctctggacaaaaccattaaagtctgggacgtctctactggttgt
ttgctgtacatccagtttgtctactctccagtcataaagatgatgccacacaaggacgga
tttgttgccgtgtcccagcacggctctttcattaaagaaggcttccactgtccagacgcc
cttcaacctggatacaaccccctccggaacttccgagcacattaccgagtcacctctcga
gtgaaaagcctgaacgctccacacaccgtgatcagcgagctcccagattacaaccctgct
cagttcaatttcatcggcatcggtctgatgaaaagcaaaccatccaacacgtgtgttctc
ctctag
DBGET
integrated database retrieval system
