Labeo rohita (rohu): 127172797
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Entry
127172797 CDS
T09007
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127172797 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127172797 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127172797 (col2a1b)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127172797 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
127172797
NCBI-ProteinID:
XP_050978158
LinkDB
All DBs
Position
11:complement(9543060..9586060)
Genome browser
AA seq
1490 aa
AA seq
DB search
MILSADSRTLLLFVATLVAFLAVVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCPKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGPRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMSGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPPGKPGDDGEAGKPGKGGERGPPGPQGARGFPGTPGLPGIKGHRGYPGLDG
AKGEAGATGAKGEGGSPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGSPGAAGPPG
PVGTAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSSGPSGISGNPGSDGLPG
AKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEIGNAG
PQGAPGPAGEEGKRGPRGEPGAPGPIGPTGERGSPGNRGFPGQDGLAGPKGAPGERGGPG
VSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEAGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGASGATGPRGERGFPGERGGVGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
APGKDGARGLTGPIGPTGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPFGPAGFAG
PPGADGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEKG
DPGEDGPPGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRG
PPGPVGAPGLTGPAGESGREGNPGSDGPPGRDGSAGIKGDRGDTGSVGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPKGPAGPSGPAGARGMPGPQGPHGDKGEAGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGETG
PAGPPGNPGPPGLPGPPGPGIDMSAFAGLSHPEKASDPLGYMRADQAAEGNRQNDAEVDA
TLKSLNNQIENIRSPDGTKKSPARTCRDLKHCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCVYPKPANIPRKNWWTTKGAERKHVWFGEAMNGGFHFNYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDETTGNLKKALLLQGSNNVEIKAEGNSRFTYSVLEDG
CKKHTGQWSKTVIEYKSQQTSRLPILDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattcaaggactttactgctatttgtggcaacactagtcgcattt
ttggccgttgtcaaatgccaagaggaggatgaccaagacccaggcagctgtacgcaggac
ggccagttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatttgcgtttgc
gacaccggtgcggtcctgtgcgacgaaatcatctgcgaggagctgaaagattgtcccaaa
cccgagatcccatttggggagtgctgtccagtctgtgccgctgaccagccttcttcccct
ggcttgccaggtgctaagggacaaaaaggggaaccaggagacataacagatgttgtggga
ccaaggggaccagctggtcctatgggaccaccaggagaacaagggccgcgaggagataga
ggagagaagggggagaagggaagtccaggtccccgtgggagagatggtgagcctgggacc
cctggaaaccccggccctcctggtccgcccgggccaaacggacctccaggccttggtgga
aactttgctgctcagatgtctggtggatttgatgacaaagctggaggtgcacagatggga
gtgatgcaaggaccaatgggtccgatgggtccacgaggaccaccaggccccaacggagct
cctggcccacaaggatttcaaggcaaccctggagaagcaggagagcctggatcagccggc
ccattgggtcctcgtggcccccctggtcccccaggaaaaccaggagatgatggtgaagca
ggcaaacctggaaagggtggtgaacgtggacctcctgggcctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttatccaggtcttgatggt
gctaaaggagaggctggagccaccggggcaaaaggtgagggcgggtctcctggagaaagt
ggtgctcctggaccaatgggtccacgtggtttacctggtgaaagaggacgtccaggacca
tctggagctgctggtgctcgtgggaatgatggttcacccggcgctgctggtcctcctggt
ccagtcggtacggccggagctcctggtttcccaggatcccctggtgctaagggtgaagca
ggacctactggtgctcgtggaccggagggagcacaaggaccccgtggagagtctggcgtc
cccggatcttcaggaccttctggaatctctggtaaccctggtagtgatggcctccctgga
gccaaaggatcagtgggtgctccaggtatagctggtgctcctggtttcccaggccctcgc
ggccctcctggacctcagggagcgactggacctctggggccgaagggacagtctggtgat
cctggtctcgcagggttcaagggtgaggctggtcccaaaggagaaattggtaacgctggg
cctcaaggtgcccctggccctgccggagaggagggtaagcgaggacccagaggagagcct
ggtgctcctggacccatcgggccaactggagagagaggatctcctggtaatcgaggtttt
cctggacaagatggtctggctggtccaaagggtgctccgggtgagcgcggaggtccggga
gtatcaggaccaaagggagccagtggcgatcctggccggcctggagaaccaggtctgcct
ggtgcaaggggtctgactggacgtccaggtgatgctggtccacagggcaaagttggtcca
tctggcgctgctggtgaagatggtcgtccgggacccccaggccctcagggtgctcgtggt
cagcctggagtgatgggattccctggacccaagggtggcaatggtgaggctgggaagtca
ggagagaagggacttgctggagctcctggtttgcgtggtctgcctggtaaagatggtgag
acgggtgctgccggaccccctggacctgccggtcctgctggagagagaggagagcagggt
cagcctggaccctctggcttccagggtctacccggacctcctggcccccctggtgagggt
ggaaaacctggtgatcagggtgttccaggagaggctggtgcctcaggggcgaccggacca
cgtggtgaacgtggtttcccaggagagagaggaggtgtagggccacaggggctccagggg
cctcgaggtcttccgggaactccaggaaccgacggacccaagggtgccatcggcccaggg
ggagcttctggtgctcagggacctccgggactacagggaatgcctggagagagaggggca
tctggaattcctggaccaaagggtgacagaggtgacaatggtgagaaaggacctgaagga
gctcctgggaaagatggcgcaagaggtttaacgggtccaattggtcctactggcccggcg
ggacccaacggtgaaaagggagaatctggacctgcaggaccgtctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggtccttttggtcctgctggttttgctggt
ccacctggtgcagatggacagcctggtgctaaaggagagcagggtgaaggtgggcagaag
ggtgatgctggtgcaccgggtcctcaggggccttctggagctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgtggtgctcaaggaccacctggtgccacaggt
ttccctggagccgctggtagagtaggacctcctggccctaatggtaaccctggtcctgct
ggtcctgctggtcctcctggtaaagatggtccaaagggtgtgcgtggcgatggaggtcct
cctggaagacctggtgatgctggattgcgtgggccagctgggactcctggcgagaaggga
gatcctggagaagatggtcctcccggtccagatgggccagcaggtcctcagggtctggct
gggcagcgtggtattgttggacttcctggacagcgtggtgaaagaggtttccctggtctg
cctggaccctctggtgagcccggtaaacaaggagctcctggtggacctggagaccgtgga
cctcctggacccgtgggagcacctggtctgacaggacctgctggggaatcaggaagagag
ggcaatcctgggtctgatggtcctcctggccgagatggttctgcaggaataaagggtgac
agaggtgacaccggttcagttggcgctccaggtgctccaggtggtactggtgctcctggt
ccagtcggacccactggcaaacagggagacagaggagaggcgggacccaaaggacctgct
ggaccttcagggcccgctggagctcggggaatgcctggcccacaaggcccgcacggagat
aagggagaggctggcgattcaggtgagagaggacagaaaggacacagaggtttcacgggt
cttcagggtctacctgggcctcctgggcaacctggtgaccaaggtgcttctggacctgct
ggacctggtggagcaagaggacccccaggccctgttggcccagctggaaaagatggagca
aatggtttgcctggacccatcggaccccctggacctcgtggtcgttctggagagactggg
ccagctggtcccccaggaaatcctggtccccctggtcttcctggaccaccaggtcctggc
atcgacatgtctgccttcgctggtctgtctcatcctgaaaaagcttctgatcccttgggg
tacatgagggcagaccaagccgccgaaggtaaccgtcaaaatgatgcagaggttgatgcc
actctgaaatccctgaacaaccagattgagaacatccgcagtcctgatggtactaaaaag
agcccagcccggacctgcagagacctgaaacactgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgttgatgctatgaaggtgttctgcaacatg
gagaccggcgagacctgcgtttatccaaaacccgccaatatcccacgcaagaactggtgg
actaccaagggtgctgagcgtaaacatgtttggtttggagaagccatgaatggtggattc
cattttaactatggagatgacaatctggcacctaatacagcaagtattcagatgactttc
ctaagactgctgtccacagaggcctcacagaacctcacctaccactgcaagaacagcgtt
gcctatatggatgagaccactggtaacctgaagaaagctctgctgctgcagggatccaat
aatgtggaaatcaaagctgagggcaacagccgcttcacgtatagtgttctggaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcattgagtacaaatcacagcagact
tcacgtcttcccatactggacattgcacctatggatattggaggagcaaatcaggagttt
ggagtggacgtgggtgccgtctgtttcttgtaa
DBGET
integrated database retrieval system
