Labeo rohita (rohu): 127172820
Help
Entry
127172820 CDS
T09007
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172820 (chd5)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127172820 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
127172820
NCBI-ProteinID:
XP_050978199
LinkDB
All DBs
Position
11:22276089..22321035
Genome browser
AA seq
2005 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDVPDEDEEGERRRSVPLSPLERFFSEDDSVKQHKKKKPSKI
MEGKEPKVRKKKKKEMLPSGLDDMSDREDHGHRSGSESSTYSSLKKKKKKPKEKKERKTK
PRKKDEDEDDDDDDDGNMKEPKSSSQLMQEWGLEDVQYAFSEDDYKTITNYKAFSQFLRP
LIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAVAAAVETVNVAPPICIRS
IQQISPSGPIKKAKTKEGKGPGAKKKSKPVKETKKKGKPKKSKSKAGQGGKRKKGSSSEE
DFLDDFSDFDDISIHSASVRSDTSAAPKKKSARRGRKKRKREDGDGYETDHQDYCEVCQQ
GGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEDEVAGEEE
DDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKI
LHWAWGDPPLPPEVPLGRDGEKVDALAKMPLKGRPERQLFVKWAALSYWHCSWVSELQLE
LYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRRSKDPQYAAMEERFYRYGIKPEWM
IIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWETDEFDVPDYDSFKQAYWDHRDQVLGES
HHPLLFRKGKRLKEEGKRREPPPDTPVVDPTIKFEQQPWYIDDTGGTLHPYQLEGLNWLR
FSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWA
PDFYVVTYTGDKDSRAVIRENEFTFEDGTVKSGRKVFRMKRFSSQKDTPIKFHVLLTSYE
LITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDDVEAARTMGDNKEGEEGSVIHYDDNAISKLLDRSQDATEDTEIQ
NMNEYLSSFKVAQYVVREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLK
SDRDKPLPPLLARVSGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
KEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKFSTPDLIPVGLELKKLTESVSSDPNTPVPASPVPTQPSTPVPSEKTESVSGSQEDKEI
TEPESTKSQDPEQPIMPEPSPAPEKTNEGEELKSRSPEGKGMEESEKNTSPVLSEPSSKQ
AQPPTKPSEQSANQTPLDCGKGKDTSPERGENKPSPAKIDDKEQKPVSTAMPDDLKSEDP
PENQLNGEKDARDDVDESHRDDKNSIKTRFMFNIADGGFTELHTLWQNEERAAVSSGKMY
DIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRF
KLLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPA
NAVLHKVLNQLEELLSDMKADVTRLPSMLSRVPPVSARLQMSERGILSRLTSRGNEPPPQ
QPFPQGSFGCSQMYNSSFAGGFRGPGGTAMVNYSQMPLGPYVSVSSNGPPAPTSHLEKKS
SDALRDVATPDLKSGKPSDVICIED
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctaagcaatgaagatgaggggcaagacgatatggattttgaggacgac
gtgccagatgaagatgaggaaggtgaacgtcggaggagtgtccccctatcacccttagag
agattcttctctgaggatgattcggtcaaacagcataagaagaagaaacccagcaagata
atggagggaaaggagcccaaagttcggaaaaagaagaaaaaggagatgcttcctagtggg
ctagatgacatgtcagacagagaggatcatggtcacaggtcggggagtgagagcagcacc
tacagctccctgaagaagaaaaagaagaagcccaaagagaagaaggagagaaaaactaaa
ccgcgaaagaaggatgaagatgaggacgacgatgatgacgatgatggaaacatgaaggaa
ccgaagtcatccagtcagctgatgcaagagtggggtctcgaagatgtgcagtatgccttt
tcagaggacgactataaaaccatcaccaactataaagccttcagccagtttcttaggcct
ctcattgccaagaagaaccccaagatccccatgtcaaaaatgatgacggtgcttggagca
aaatggagagagttcagcgcgaacaaccctttcaaaggcacctctgcaactgctgtagcg
gctgctgtggccgctgccgtggaaactgtcaatgtggctccgcccatctgtattagaagt
atccaacagatctcaccatctgggccaatcaaaaaagccaaaaccaaagagggaaagggg
cctggtgctaaaaaaaaaagtaagccagtgaaagaaacaaaaaagaaagggaaaccgaag
aagtccaaatcgaaagcaggccagggtggaaaaaggaaaaaaggctcttcgagcgaggag
gatttcctggatgacttttcagactttgatgacatcagcattcacagtgcctctgtacgc
tcagacacttcagcggcacccaaaaagaagtcggcccgccgaggacgaaaaaaaagaaaa
agagaggatggagacggctacgagacagaccatcaagactactgtgaggtttgtcagcag
ggaggagagatcattctatgtgacacctgtcccagagcatatcacctggtgtgtctagat
ccagaactggagaaagcccccgagggcaaatggagctgcccccactgtgaaaaagaaggc
attcagtgggaggccaaagatgacgaggaggaggaagacgaggttgctggtgaggaggaa
gatgaccacatggagttctgcagagtgtgtaaggacgggggagagctgctgtgctgtgac
acctgcccttcttcctaccacatccactgtctcaacccaccccttcctgaaattcccaat
ggagagtggctgtgtccacgatgcatgtgtccaccactaaaaggaaaagtccaaaagatt
ctgcactgggcgtggggtgatcctcctctaccacctgaggttcctcttgggcgagatgga
gagaaggtggacgctttggccaaaatgccattgaagggtcgtccagagaggcagctgttt
gtgaaatgggccgcgctgtcctactggcactgctcctgggtcagcgaactacagttggag
ctgtatcacacggtaatgtaccgtaactaccagcggaagaacgacatggatgaaccgcca
ccgtacgactacggctctggggaggaggagcttaacagcgagaaaaggaggagcaaagac
cctcagtatgcagccatggaagaacgattctaccgttacggcatcaagccggagtggatg
atcattcaccggatcctcaaccatagctttgacaaggatggagatgtacactacttgatt
aagtggagagatttaccatacgatcaatgcacctgggagactgatgaatttgacgtccca
gattatgacagctttaaacaagcctactgggaccacagggatcaggtgctcggtgaaagc
catcaccccctgctgttcagaaagggaaagagactcaaagaggaaggaaagaggagagaa
cctccgccagacactccggttgtggatcctaccatcaagtttgaacagcagccatggtac
attgatgacacaggcggaactctgcacccataccagctggaaggcctgaactggttgcga
ttctcttgggcccaaggaaccgacacaatcttggctgatgaaatgggtcttggcaagact
gtgcagactatagtgttcctgtactcactctacaaagagggtcactccaaagggccgttt
ctggtcagtgcgccactctccaccatcatcaactgggagagagagtttgagatgtgggct
cccgatttctatgttgtgacttacacaggggacaaagacagcagggctgtcatacgcgag
aatgaatttaccttcgaggacggcaccgttaaatcgggtcgcaaggttttccgcatgaag
aggttttcctcacagaaggacacaccgataaagtttcacgtcctgctgacgtcatatgaa
ctgatcaccattgatcaggcaatacttggctccattacctgggcctgtttggttgtggat
gaagcccaccgactaaagaataaccaatcaaagtttttcagaattctgaatggctacaaa
atctactacaagctgctcctgactggaacccctttgcagaacaatctcgaagagcttttt
cacctgctcaactttctcaccccagagcgcttcaataacctggagggctttctggaggag
tttgcggacatatcgaaagaggaccagattaagaaactacacgacctgcttgggccgcac
atgctcaggagactgaaggcagatgtgtttaagaacatgccggcaaaaaccgagctcata
gtgcgagtggagctcagcccgatgcagaagaaatactacaagttcattttaacacgaaac
tttgaggcgttgaattccaagggaggaggcaaccaggtgtctcttcttaacatcatgatg
gacttgaagaaatgctgcaaccatccctacctttttccagtggctgcagtggaagctccg
gtcttacccaatggttcttatgatggcaacctcctagtgaaatcctcagggaagctcacc
ctgcttcagaagatgctcaaaaaactgaaagatgaagggcacagggttctcatcttctct
cagatgacgaagatgctagatctgctagaggacttcctggagtttgaagggtataaatac
gagcgtattgatgggggcatcacaggggggctgcgacaggaggccatcgatcgctttaac
gcacccggggctcagcagttctgttttctgctgtctacacgtgctggaggattaggtatc
aatctggcaaccgcagacacagtgatcatatatgactctgactggaacccacataatgat
attcaggcattcagcagggcacatcgtatcggacaaaataaaaaggtgatgatctatcgc
tttgtaactcgggcatccgtagaggagcgtattacccaggtggccaagcgaaagatgatg
ctgactcacctggtggtgcgtcccggcttgggctctaagacgggctccatgtccaaacag
gaactagatgacatcctcaagtttggcactgaggagcttttcaaagacgatgtggaagcc
gccagaacgatgggagataataaagaaggagaggagggcagcgtgatccactacgatgat
aacgccatttccaaactgctggatcgtagccaggatgccaccgaagacacagagatccaa
aacatgaacgagtacctgagctcatttaaggtggctcagtatgtagtgagagaggaggat
ggagaggaggaggtccaaagggagattattaagcaggaagagaatgttgatccagactac
tgggagaagctcttgaggcaccattatgagcagcagcaggaggatctggcccggaacctg
ggcaaagggaaacgcattcgcaaacaggtcaactataatgacgcctctcaggaggaccaa
gagtggcaggacgatctttcagataatcagtctgagtactctgtcgggtccgaggatgag
gatgaagattttgaggaacgtcctgaaggagggcgcagacaatctcgcagacagttgaag
agcgatcgggacaaaccgttgccaccattgttggctagagttagtggaaatatagaggtt
ttgggatttaacgcccgccagcggaaagccttcctgaatgcgattatgcgctggggtatg
cccccacaagatgccttcaactctcactggctggtccgtgacctgcgaggaaaaagtgag
aaggagttcagggcttatgtatctctgttcatgaggcacctgtgtgagccaggggcagat
ggagcagaaacatttgcagatggggtcccaagggaaggcctgtcccgccaacatgttctc
acccggattggtgtcatgtcgctggtccgcaagaaggttcaagagtttgagcatgtgaat
gggaagtttagtacaccagatctgattcctgtaggattggagctgaaaaaacttactgaa
agtgtctcgtcagaccccaacacgcctgttcctgccagtccggttccaactcaacccagt
acacctgttccttcagaaaagacagagtcagtgtctggttctcaagaagacaaggagatt
acagaaccagagagcaccaaatcgcaggacccagagcagcccataatgccagaaccctcc
cctgcaccagagaaaaccaatgagggagaagaattaaaaagcagaagtccagaaggaaaa
ggaatggaagagagcgagaagaacacctctcctgtcctttcagagccatcgtccaaacaa
gcacagccgcccactaagcctagtgagcagtcagccaatcagacgcctttagactgtggt
aaagggaaagatacttctccggagagaggggaaaataaacccagcccagcaaaaatagat
gataaggagcaaaaaccagtttctacagccatgcctgatgatttaaaatctgaagacccc
cctgagaaccaactgaatggagagaaagacgcgagggacgacgtggatgagagccacaga
gatgacaagaacagcatcaagactcggttcatgtttaacatcgcagatggtggatttaca
gaattacacacgctatggcagaatgaggaacgcgcagctgtgtcatctggcaaaatgtac
gacatctggcaccgtcgccatgactactggctgctggctggcatcgtaacacatggctat
gcccgttggcaggacattcagaatgacccacggtacgccatcctcaatgagcctttcaag
actgaaatgcacaaagggaactacttagaaatgaagaataaatttcttgccagacgattt
aagctcctggaacaggctttggtaattgaggagcagctacggcgtgcggcatacctgaat
atgactcaggatccaagccacccggccatggccctcaacacacgtttcgcagaggtggag
tgcctggctgagtcccatcagcacctctccaaagagtcactggctggtaacaagccagcc
aatgctgtgctgcacaaagtgttgaatcagctggaggagttattaagcgatatgaaggct
gacgtgacacggctgccctccatgctttcaagggtcccacctgtgtccgcccgtctccag
atgtcagagcggggcatcctcagcaggctcaccagccggggcaacgagccgccacctcag
cagcctttccctcagggctctttcggctgttctcagatgtataatagcagtttcgccgga
gggttccgtggacctggaggcaccgcgatggtgaactacagccagatgcccctggggccg
tacgtcagtgtgtcctcaaatgggcctccggccccaaccagtcacctagagaagaaatcc
agtgatgctctgcgagatgtggccacccctgatttgaaatcaggcaaacctagcgatgtt
atatgcattgaggactag
DBGET
integrated database retrieval system
