Labeo rohita (rohu): 127172878
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Entry
127172878 CDS
T09007
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03030
DNA replication
lroh03410
Base excision repair
lroh03420
Nucleotide excision repair
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127172878 (rfc4)
03410 Base excision repair
127172878 (rfc4)
03420 Nucleotide excision repair
127172878 (rfc4)
03430 Mismatch repair
127172878 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127172878 (rfc4)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172878 (rfc4)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127172878 (rfc4)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
127172878 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
127172878 (rfc4)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
127172878 (rfc4)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
127172878 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
127172878 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
AAA_30
AAA_14
DUF815
Mg_chelatase
SLFN-g3_helicase
AAA_5
AAA_24
RuvB_N
AAA_28
Kinesin
AAA_19
ResIII
AAA_7
Gp44_lid
Motif
Other DBs
NCBI-GeneID:
127172878
NCBI-ProteinID:
XP_050978306
LinkDB
All DBs
Position
11:12618403..12630332
Genome browser
AA seq
368 aa
AA seq
DB search
MQAFLKGSSSQSVKAQKPSSSASSSSSSSSAAAAAGEKKQKAVPWVEKYRPKCVDEVAFQ
EEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERG
IQVVREKVKNFAQLTAAGTRPDGKPCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTR
FCLICNYVSRIIEPLTSRCSKFRFKPLANDIQQERLLEICGKENLKYSKEGIEALVRVSE
GDLRKAITYLQSAARLNSERGITEQIIIEIAGVVPPKVIETLLQICYKGTFEKLEMAVKD
LIDQGYAATNVLNQLHDAVIDEKLSDKQKSVITEKMAEVDKCLADGADEYLQLLSLCSVI
MQQATQNT
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggatcttcatcgcagagtgtcaaagctcagaaaccatcttca
tcagcatcatcatcatcatcatcctcctcagcagcagcagcagcgggagagaagaagcag
aaggcagtgccatgggtggagaaatacaggccgaagtgtgtggatgaagtggcctttcag
gaggaggtggttgcagtactcaagaaatctctagagggcgctgatctgcccaacctgctg
ttctatggacctcctggaacaggaaagacgtccaccatcctggcggctgctcgagagctt
tacgggccggagctgtaccgtcagagggtgctggagctcaacgcgtcggacgagcgcggc
attcaggtggtccgtgagaaggtgaagaacttcgctcagctgacggcggccggcacgcga
ccggacgggaagccctgtcctccgtttaagatcatcatcctggacgaggccgactccatg
accggcgccgctcaggcggctctcagacgcaccatggagaaagagtcccgaaccactcga
ttctgcctcatctgcaactacgtcagccggatcattgagccgctcacctccagatgctcc
aagttccgctttaaaccgctggccaacgacattcaacaggagcgactgctggagatctgt
gggaaggagaacctcaagtacagcaaagagggaatcgaggctctggtgagggtgtcagaa
ggagatctgaggaaagccataacgtatctccagagcgccgccagactcaactcggagcga
ggaatcactgaacaaatcatcatcgagatcgctggggtggttccacccaaagtgatcgaa
acgctcctccagatctgctacaaaggcacgtttgagaagctggagatggctgtgaaggat
ttgatcgatcagggatacgccgccaccaacgtcctcaaccagttacacgacgccgtcatt
gacgagaagctgagcgataaacagaaatctgtcatcacggagaagatggccgaagtggat
aagtgtctggcagacggagcagacgagtatctgcagttactgagtctctgctccgtcatc
atgcagcaggccacgcagaacacctga
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