Labeo rohita (rohu): 127172934
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Entry
127172934 CDS
T09007
Symbol
pbrm1
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1
KO
K11757
protein polybromo-1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127172934 (pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127172934 (pbrm1)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127172934 (pbrm1)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127172934 (pbrm1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
127172934 (pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127172934
NCBI-ProteinID:
XP_050978438
LinkDB
All DBs
Position
11:903068..937604
Genome browser
AA seq
1773 aa
AA seq
DB search
MSAVRAVIKREHHHAECCMAQCVRVRVYMCVCACVCLCFYPPVLMHVSHSLCLQTHSGPT
FNIIIITIIIIIIALQTTESCRHSEPCRHCSSALVISHNNKCRRSRVHGESRSCTSVLLK
MLIMSLHRNKNQRAFTMGSKRRRATSPSSSVSGGDFEDSQTTSVPSTSRKRRRTTNIPTV
DPIAVCHELYNTIRDYKDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKME
EYDDVEQLTADFQLLFNNAKTYYKPETPEYRAACKLWDLYIRTKNEFVQRGDYDEDDDDD
DSQENPGGATEEESVSSLKEVLGQLLDAVLTYTEHGRLISELFQRLPSKVQYPDYYAIIK
EPIDLKTIAQRIQVGYYKSVNHMAKDIDLLVKNAKTYNEPGSQVFKDANTIKKIFAQRKL
ELEHAEPIKSSIRIRNRRFAQGDRLSSITTALQYGSESEEDAILTSSVHYDEGESEAESI
HSSMDMSNPIFQMYEAVRGCRNNQGQLLAEPFFQLPSRKDYPDYFQQISHPISLQQIRSK
MKNNEYESVEQIDTDLNLMFENAKRYNVPNSQIYKRVLKLQHILQMKRKELTRRDDEDGD
SMLSSTLSDGGSTKRKSHKKNTKKNRMKTLYAAVAETREMGTGRRLCDLFMVKPSKKDYP
DYYKIILEPMDLRTIDHNIRSDRYPGEDAMMEDMKLMFRNARHYNEEGSQVYNDANILEK
ILREKRRELGPPPDDDDIISPKLKIRKSGISPKKSKYLTPLQQKLNELYEAVKNYTDKRG
RRLSTIFLRLPSRAELPDYYVAIKKPIDMEKVKTHMLANKYQDVDALVEDLVLMFNNACT
YNEPESLIYKDALVLHKVLLETRRDLEGGDDAHVPDVARLIQELVRNLFVSVLGHQDDEG
RCYSDSLAEIPAVDPNNPDKTPLNFEIIRANVDKGRYRRLDVFQDHMFEVLEKARRLHRT
DSEIFEDSVELQQFFIRIRDELCKNGEILLSPALSYTTKHLHSDVEKEKKEKLPKEYEED
KLKREEEKKEAEKSEDTAGGGWQGALQRNYSQDCSFKDNMYHVGDYVYVEPTEPNLQPHI
VCIERLWQDDAGENWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKIPVSKILGKCVV
MFVKEYFKLQPDSFRPEDVFVCESRYSAKTKSFKKIKMWTMPLSSVKFVPREVPLPVVRV
ASMFAPKQDSEKPPEVAEDGKAAPSIIDKEREDVTMEVSNGEPGCQYYEQLCYNDMWLKV
GDCVYIRSHGLVRNRVGRLEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNL
EETCPMTCIGGKCTVSSFKDFLSCRPTEMPEEDVLLCESRYIESEKQMKKFKGLKRFSLS
AKVVEDEIYYFRKLIVPQKEPSPLLDKKIEELEAKFADMTDEELEDLGDDDGDGSDAHCM
PTLQTQLTSDMDMLHYAPPQSTPKSIKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQHP
DFSFGELSRLVGTEWRNLEATKKAEYEERAAKVAEQQERDRAAHQNSPRAGTPVGALMGV
VPPPTPMGMLSHSMTPMAGMMCSYRPPMLPFQGPVDGMINMAGIPPHPMGVPTLPLYSLW
GLPSMPHAGINGMAPGSTGSTYGTQMGVMSSGQQAPPPYPGQGQVGQPALQQPSTPIFVA
PPPKPQRLLHSEAYLRYIEGLSAESTTVSKWDQTLSARRKDVRLTKEQESRLPSHWLKSK
GAHKTMADALWRLRDLMLRDTLNIQQTYNIQNI
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgttcgtgctgtaataaagcgcgagcatcatcacgcagagtgttgcatggcc
cagtgcgtgcgtgtgcgcgtgtatatgtgtgtgtgtgcgtgcgtgtgtctttgtttttat
ccgcctgtgctgatgcatgtgtcacacagcttgtgcctgcagacacacagcggtcccacc
ttcaacatcatcatcatcaccatcatcatcatcatcatcgccttgcaaaccacagagtcc
tgcagacactctgaaccctgcagacactgctcaagtgcattggtgatcagtcataataat
aaatgcagacgatcacgggttcacggagagtctcgtagctgcacatcagtcctgttaaag
atgctgattatgtcattacatcgtaataaaaaccagagggcttttacaatgggctcaaag
cgacggagagccacttctccgtccagcagtgtgagtggaggcgattttgaggacagccag
accacatccgtaccttcgaccagccgtaagaggagaagaaccacaaacattcccactgtt
gaccccattgctgtgtgtcatgagttatacaacacaatcagagactataaggatgatcag
ggcaggatgctgtgtgaactcttcatcagagcaccaaagagaaggaaccagccggattac
tatgacgtggtgtctcagcccattgacatgatgaaaatccagcagaagctgaagatggag
gagtatgatgatgtggagcagctcacagctgattttcagctcttattcaacaatgccaag
acatactacaaaccagagactccagagtacagagcagcttgtaaactgtgggatctgtat
atccgcaccaaaaatgagtttgtgcagcgaggggactatgatgaagatgacgacgatgac
gactcacaggaaaaccctggaggagccacggaggaggagtccgtttcgagccttaaggaa
gttcttgggcagcttctggatgctgtgttgacgtacacagaacatgggcgtctcattagt
gaacttttccagagacttccctctaaagtgcaatatccagattattatgctattattaaa
gaaccaatagatctgaagaccattgcacaacgaatacaggtgggctattataaaagtgta
aaccatatggctaaagacattgacttgttagtcaaaaatgccaaaacctacaatgaaccc
ggatcacaagtattcaaagatgcaaacactatcaaaaagatttttgcacagagaaaactg
gagcttgaacatgccgaacctattaaaagcagcatcaggatcaggaaccgaaggttcgca
cagggagatcgactctcctccatcactaccgctctacagtatggctccgagagcgaagag
gacgccatattaactagctctgttcattacgatgagggcgagtcagaggccgagagcatc
cactccagcatggacatgagcaaccccatcttccagatgtacgaggcagttcggggctgc
aggaacaaccagggacagcttttagccgagcccttctttcagcttccctccaggaaagac
taccccgactacttccagcaaatcagccatccaatctccctccagcagataaggagtaag
atgaagaacaacgagtatgaaagtgtggaacagatagacacagacctcaacctgatgttt
gagaacgcaaagcgctacaacgttcccaactcgcaaatctacaaacgcgtgctgaagttg
cagcacatattgcagatgaaaaggaaagagctgacgaggagagatgatgaagacggagac
agcatgctgtcatctactctttctgatggaggcagcaccaagcgcaaaagccataagaag
aacacaaagaagaaccgcatgaagactctgtacgccgctgtggcggagactcgggagatg
ggcacaggccggagactctgcgacctctttatggtcaagccctcaaaaaaagactaccca
gactactacaagattatactggaaccaatggacctgaggaccatcgaccacaacatccgc
tctgacagataccccggtgaggacgccatgatggaggacatgaagctgatgttccgtaat
gcacgtcactacaacgaagaaggctcacaagtctacaatgacgccaacattctggagaag
attttgagagaaaagcgaagggaactcggacctccgccggatgacgatgacatcatttca
cccaagctgaaaattaggaagagcggcatctctcctaaaaagtccaagtacctgactcct
ctgcagcagaaactcaatgagctctatgaagcggtgaagaactacaccgacaagcgcgga
cggcgtctcagcaccatcttcctccgtcttccatcccgcgctgagcttccagactactac
gtggccatcaagaaacccatagacatggagaaggtgaagacccacatgctggccaacaag
taccaggatgtcgatgctctggtggaagatctagtgttgatgttcaacaacgcctgcacc
tacaacgagcctgaatcgctgatctacaaagatgcattggtgcttcacaaagtgcttttg
gagaccaggagggatttggagggaggcgacgacgcgcacgtgccagatgttgcgcgactc
atccaggagctcgttcgcaatctcttcgtctcggttctcggtcatcaggatgatgaggga
cgctgctatagcgactcgctggcggagattccagctgttgatcccaacaatcccgataag
accccgttgaactttgagatcatcagagctaacgtggataagggccgttataggagacta
gacgtgttccaggaccatatgtttgaagttttggagaaagcccgacgcctgcacaggact
gattctgagatctttgaggactctgtggagctccagcagttcttcatccggatcagagat
gaactgtgtaagaacggagagattctgctgtcgccggccctcagctacaccacgaaacac
ctgcacagcgacgtggagaaagagaagaaagagaagctgcctaaagaatatgaagaggat
aaactcaagagagaggaggagaagaaagaggctgagaagagtgaggacacagcgggtggt
ggatggcagggagccctgcagcgcaactacagccaggactgcagcttcaaggacaacatg
taccatgtgggagactatgtttatgtcgaacccacagaaccaaacctgcagccgcacatc
gtctgcatagagcgcctctggcaggatgatgcaggagagaactggctttatggctgctgg
ttctatagacccaacgaaacatttcatctcgctacacgcaaatttcttgagaaagaagtt
ttcaaaagtgactattacaacaaaatccctgtcagtaaaatactgggcaaatgtgtcgtc
atgtttgtgaaggagtatttcaagcttcagcctgacagcttcagacccgaagacgtattc
gtctgcgagtctcgttattccgcgaaaaccaagtccttcaaaaagatcaagatgtggacg
atgcccctgagctcagtcaagttcgtccctcgtgaagtgccgctgcccgtggttcgagtg
gcctccatgtttgcacccaaacaggacagtgagaagcctcctgaggtggcagaggatggc
aaagcggcaccatccattattgataaggagagagaggatgtcactatggaggtcagtaat
ggagagccaggctgccagtattatgagcagctctgctacaacgacatgtggctgaaagtg
ggagactgcgtctacatccgctctcatgggctcgtgcgcaaccgcgtgggcagattagag
aagatgtgggtgcgagatggagctgcctattttttcgggcccatcttcatccatcccgag
gagactgagcatgaacctactaagatgttctacaagaaggaagtgttcctcagcaacctg
gaagaaacctgccctatgacctgtattggagggaagtgtacagtgtcttctttcaaagat
ttcctctcctgccggccaactgaaatgccggaggaggatgtgttgctgtgtgagagccgc
tacatcgagagcgagaagcaaatgaagaagtttaaagggctgaagcgtttctctctgtcg
gccaaagtagttgaggatgagatctattactttcgaaagctcatagtgcctcagaaggag
ccgtctccactgctggataagaagatcgaggagttggaggccaagtttgcagacatgacg
gatgaagagctggaggatttgggtgatgatgatggagacggatcagatgctcactgcatg
ccgacgcttcagactcagctgaccagcgacatggacatgctgcattacgctcctccgcag
tccacgccaaagtcaattaagggtctgtcgaagaaggagggggcgaagaggaagatcaac
atgagtgggtacatcctcttcagcagtgaaatgagagccgtcatcaaggcccagcaccct
gacttctcctttggagagctcagtcgactggtcggcacagagtggaggaaccttgaggct
actaagaaagctgagtacgaagagcgggcagctaaggtagcggagcagcaggagcgagat
cgagcagcgcatcagaactccccaagagcaggtaccccagtaggggcgctcatgggggta
gtacctcccccgacccccatggggatgcttagccacagcatgacgcctatggcaggcatg
atgtgtagttacaggccacccatgctgccctttcaggggcctgtcgatggcatgattaac
atggccggcattcctccacatcccatgggggtgcctaccttacccctctactccctgtgg
ggtttgcctagcatgccacatgcgggtataaatgggatggccccaggctctacaggaagc
acttacggaactcagatgggtgtgatgagctcaggccagcaggctccaccaccctacccg
ggacaggggcaggttgggcagcccgctctgcagcagccctccacccccatatttgtggct
cctccacccaaaccccagcgactgctccattcagaggcctacctgagatatatagaagga
ctcagcgctgagtccactactgtcagcaaatgggaccaaacgctctctgctcgcaggaag
gacgtacggctcacaaaagagcaggagagccgtctgccctctcattggctgaagagtaag
ggagcgcacaagaccatggctgacgctctgtggcgactacgggacctaatgctacgagac
acgctcaacattcaacagacgtacaacatccaaaacatctga
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integrated database retrieval system
