Labeo rohita (rohu): 127172976
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Entry
127172976 CDS
T09007
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127172976 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127172976 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127172976 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127172976 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127172976 (col6a2)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127172976 (col6a2)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127172976 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
127172976 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
127172976
NCBI-ProteinID:
XP_050978507
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All DBs
Position
11:19586741..19606562
Genome browser
AA seq
1017 aa
AA seq
DB search
MRMMRLSILLLLSVVHTQAQVPASPTSCSKVIECPVDLYFVIDTSETIALQENPPGSLVE
SVKDFTFKFADKLEDVTHKGLVHITWSVGGLHFSQLQEIISPITTKKKFTDRLRQIKYLG
KGTYTDCAITNMTQQLLSSPTKPNPKLIRFAVIITDGHVTGNPCGGIKVAAERARDKSIK
MFSVASSRNLEETGLREIANSPAELFRNKYMAVDLTGLGPVIVNSTINRIYETMLHLAYQ
ECYSVKCLETPGPPGPPGHRGQKGAKGDNGIPGPKGERGRPGDPGIEGPIGHPGPKGEPG
LKGEKGEIGAQGKKGVAGLAGRNGTDGQKGKIGRIGAPGCKGDPGDKGPDGYPGDVGEPG
PPGTPGENGDPGRPGRAGPPGPGGDPGPKGERGSPGSPGIPGQKGSAGTAGGPGPKGDPG
RRGDFGPKGGTGPNGPKGEKGEPGSEGPRGLPGEVGNKGSKGDNGLPGPRGPPGASGEPG
RNGTQGDPGDAGPRGDPGPPGPKGDSGRPGFSYPGPRGPTGDRGDKGSPGPRGSRGDCGP
KGDPGAKGTPGEPGEPGPPGEPGPRGPRGGPGRDGDPGTEGDPGLTECDVMNYIRETCGC
CDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMAKDPSSETGTRVGVVQ
YSHNGTFQAIRLNDSKIDSMSAFKDAVKKLEWIAGGTWTPSALKFAYDNLIRDSRRAKAN
VTVVVITDGRYDPRDDDKLLTYLCTDKSIDVNAIGIGDMFDQPEENESLKSIACRKDGRV
MGMRRFADLVAEDFIDRIETVLCPDPVIVCPDLPCKSEPAVANCIQRPVDIIFMLDGSER
MGQENFRYAREFVENVANRLILARGDNDDRNARVAVLQYGNENQHQLAFKLTSNFTTIAD
GLANMRYLDSTSNVGSGIIYAVNNIVTSRGTRLARRNAELSFVFITDGVTSNQNLEEGIS
AMRRAEGVPTVIAIGSDVDEEILAKLSLGDQTSIFRRQDFASLIKASFFERFVRWIC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgatgagactgtcgatcctcctcctgttgtctgtggttcacacacaggcccag
gttccggccagccctacttcttgctcaaaagtaatcgaatgcccagttgacttgtacttt
gtcatcgacacatctgagaccatagctctgcaggagaatccacctggcagcttggtagaa
agcgtcaaagatttcactttcaaatttgctgacaaactagaagacgttacccacaaaggt
ttagttcatatcacctggtctgtaggaggcctgcacttctcccagctgcaggagatcatc
agccccatcaccactaaaaagaagttcaccgacaggcttagacaaatcaagtacctgggc
aagggcacgtacactgactgcgccattaccaacatgacccagcaactactcagttcacca
accaaacccaaccccaagctcatacgcttcgcggtgatcatcactgatggtcacgtgaca
ggaaacccatgtggaggcatcaaagtggcggcggagcgagcgcgtgataaatctattaag
atgttctctgtcgcatcatccaggaacctagaggagacgggactaagggagatcgctaac
tcacctgctgaactttttcgtaacaaatacatggcggttgatctcacgggattggggcca
gtcatagtgaattcaacaattaatcgcatttatgaaacaatgcttcatctggcttatcaa
gagtgctactctgtgaaatgtctggagactccaggacctccgggtccaccaggacacagg
ggacagaaaggagctaaaggagataatggcatcccaggtcctaaaggagaaagaggacgt
cctggagatccaggtattgagggacccatcggacatcctggacctaaaggagagcctggt
ctcaaaggtgaaaagggagaaattggagcacaagggaaaaagggtgttgcgggactagct
ggccgaaatggaacagatgggcagaagggaaaaattggaaggattggcgctcccggctgc
aaaggtgaccctggtgacaagggtcctgatggctatcctggagatgttggagaacctggt
cctccggggactccgggagaaaatggtgatccaggtcgtccaggaagagcaggtccaccc
gggccaggtggagatcctggacccaaaggagagagaggaagtcccggatcgcctggaatt
cctggtcagaagggatctgctggaacagccggaggacctggacctaaaggcgaccctgga
agacgaggagactttggacctaaaggtggcaccgggcctaatgggccaaaaggagaaaag
ggtgaacccggttctgagggacctaggggtcttccaggcgaagttggcaacaaaggatcc
aagggtgataatggacttccaggaccaagaggcccaccaggagcttctggagaaccaggc
agaaatggtacccaaggtgacccaggtgatgctggccctagaggtgatcctgggcctccc
ggaccaaagggtgactctggcagacctggattcagctatcctggaccaagaggacctacg
ggtgacaggggtgataaaggttcacctggacccaggggaagtagaggagactgcggacca
aagggtgacccaggtgcaaagggaactcctggagagccgggagagcccgggcccccagga
gaacctggaccaaggggtcctagaggaggaccaggaagagatggtgaccctggaacagag
ggagatcctggccttactgaatgtgatgtgatgaactacatcagagagacctgtggatgc
tgtgattgtgaaaagagatgtggtgccctggatattgtgtttgtgattgacagctctgaa
agtgtggggttgaccaacttcaccctggagaagaacttcgtcatcaacaccattaacaga
ctgggctcgatggcaaaagatcctagttctgaaacaggaactcgagtcggtgttgtccag
tacagtcacaatggaacattccaggctattcgcctcaacgactccaagatcgactctatg
tccgccttcaaagacgccgtgaagaagctcgagtggatcgctggaggaacatggacgcca
tctgccttgaaattcgcctacgataacctgattcgcgatagccgtcgtgcgaaggctaac
gtgacagtggttgtgatcacagacggccggtacgacccccgtgatgacgacaaactcctc
acctacctgtgcacggacaaaagcattgatgtgaatgccatcggtattggtgacatgttt
gaccagccggaggagaacgaaagcctgaagtccatcgcttgcagaaaggatggaagagtc
atgggaatgaggcgattcgctgatctggttgcagaggatttcatcgataggatcgagact
gtactctgcccagatccagtgattgtttgccctgatcttccatgtaaaagtgagccagcc
gtagccaactgcatccagcggccggttgatatcatcttcatgctggatggctcggagcgc
atgggtcaggagaatttccgctacgcacgtgagtttgtggagaatgtcgctaaccgcctg
atcctcgcccggggagacaacgacgaccgtaatgccagggtggctgttctgcaatatggc
aatgaaaaccagcatcagttggctttcaaacttaccagcaacttcaccaccatcgctgat
ggcctggctaacatgaggtacctagattctacttcaaacgtgggaagtggcattatctac
gccgtcaacaacatcgtcacgagcagaggcacccgactggctagacgaaatgcagagctg
tcattcgtcttcatcaccgatggcgtcaccagcaaccagaacctggaggaaggcatcagc
gccatgcgcagagcagagggcgttcccactgtgattgccatcggcagcgacgttgacgag
gagatcctagcaaagctttcgctgggagaccagacgtccatttttaggcgtcaggatttt
gcaagtctaatcaaagccagcttttttgagcgattcgttcggtggatttgctga
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