Labeo rohita (rohu): 127173074
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Entry
127173074 CDS
T09007
Symbol
comp
Name
(RefSeq) cartilage oligomeric matrix protein isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127173074 (comp)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127173074 (comp)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127173074 (comp)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173074 (comp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127173074 (comp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127173074 (comp)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173074 (comp)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Opsonins
127173074 (comp)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127173074 (comp)
Exosomal proteins of colorectal cancer cells
127173074 (comp)
Exosomal proteins of bladder cancer cells
127173074 (comp)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127173074 (comp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
Motif
Other DBs
NCBI-GeneID:
127173074
NCBI-ProteinID:
XP_050978668
LinkDB
All DBs
Position
11:8705603..8718534
Genome browser
AA seq
749 aa
AA seq
DB search
MLWTVLFSCSFYLHGALVSAQGISRDGEIIKQIKGTNQELAEIKELLKQQIQEIVFLKNT
VMECEACGMRPADPQPSCVPNPCHPGVECVMTVSGVTCGPCPVGMTGNGTYCTDVDECAV
MPCHMGVRCINTSPGFRCGPCPAGYMGPQVQGVGLAYASANKQVCTDINECENSNGGCVV
NSNCINTPGSFRCGHCKTGFSGDQVKGCKPERACGNGQPNPCHASAECIVHRDGQIECAC
GVGWAGNGYLCGTDTDIDGFPDEKLECVERNCAKDNCLTVPNSGQEDADRDNIGDACDDD
ADGDGILNTEDNCVLVPNVNQKNIDQDDYGDACDNCRLVKNNDQKDTDSDGQGDECDDDI
DGDGIKNDKDNCKKVPNRDQKDRDGDNVGDACDSCPYIRNPDQMDVDNDLIGDPCDTNKD
SDGDGHQDSRDNCPAVINSSQLDTDKDGIGDECDDDDDNDGIPDLLPPGPDNCRLVPNPL
QEDLDGDGIGNVCENDFDNDTFSDIIDVCPENAEVTLTDFRTYQTVVLDPEGDAQIDPNW
VVLNQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTETDDDYAGFIFGYQDSSSFYV
VMWKQVEQIYWQANPFRAVAEPGIQLKAVKSDTGPGENLRNSLWHTGDSTNQVKLLWKDS
RNVGWKDKTSYRWFLQHRPQEGYIRVRFYEGQQMVADTGIIIDTTMRGGRLGVFCFSQEN
IIWANLRYRCNDTIPEDFETFRTQQIQLF
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggactgtgctgttcagctgcagcttttatctgcacggcgctctggtttctgct
caaggaatatccagagatggagagattatcaaacagattaaaggcacaaaccaggagctt
gcagaaatcaaagaactactgaaacaacagatacaggagattgttttcttgaagaacaca
gttatggagtgtgaagcatgtggcatgagaccagcagatccacagccttcatgtgttccc
aacccctgccaccctggtgtggaatgcgtaatgacagtcagtggtgtgacgtgtggtccg
tgtccagttggcatgacaggaaatggaacttactgtacagatgttgatgagtgtgctgta
atgccatgtcacatgggggtgagatgcattaacacatcacctggttttcgctgtggcccc
tgtcccgctggatacatgggccctcaggtgcagggggtgggactcgcctatgcatctgcc
aataaacaggtgtgcacggacattaatgagtgtgagaactcaaatggaggctgcgtggtg
aactccaactgcatcaacacgccaggctcttttcgttgtggccactgcaagactggtttt
tctggggatcaggtgaaaggctgcaaacctgagagggcctgtggtaatggtcagcccaat
ccttgccatgccagcgcagaatgcattgttcatcgtgatggacagattgaatgcgcatgt
ggagttggatgggctgggaatggatacttatgtggaacagacactgatattgatggcttt
cctgatgaaaagttggaatgtgtggaaagaaactgtgcaaaggacaattgcctcaccgtt
ccaaactctggccaagaggatgcagacagggataacatcggtgatgcatgtgatgatgat
gcagatggagatgggatcctaaacacagaggacaactgtgtgctcgtccccaacgtcaat
cagaagaacattgatcaggacgattatggagatgcttgtgacaattgccgtctggtaaaa
aacaatgaccagaaagacacggatagtgacggtcagggtgatgaatgtgatgatgacatt
gatggagatggaatcaaaaatgataaagataattgcaaaaaggtgccaaaccgtgaccag
aaagatagagatggtgataacgttggtgatgcttgtgacagctgtccctacattcgcaac
cctgatcagatggatgtggataatgacttgattggcgatccttgtgacaccaacaaagat
agtgatggagatgggcatcaggactctcgagacaactgtcctgcagttatcaacagttcc
cagctggacacggacaaggatggcattggagatgaatgtgatgatgatgatgacaacgat
ggcattcccgatctccttccacccggtcccgacaactgccgtctggttccaaacccactg
caggaggacttagatggtgatgggattgggaacgtttgtgagaatgattttgacaatgac
acatttagtgacatcattgatgtttgtcctgagaacgctgaggtcactctcactgacttc
agaacctatcagactgtggttctggatccagaaggagatgcgcagattgatccaaactgg
gtggtgctcaatcagggaagagagattgttcagaccatgaacagtgaccctggactggct
gtaggctacacggcattcaatggtgtggactttgaagggacgtttcatgtgaatactgag
acggatgatgactacgcaggctttatctttggctatcaggacagctcgagcttctatgtg
gtgatgtggaagcaagtggagcagatttactggcaagccaatcctttccgagctgtagct
gagcctggtatccaactgaaggcagtgaaatcagacacgggacctggagaaaacctgcgt
aattcactctggcacacaggtgactcgacaaaccaggtgaagctcttgtggaaagactcc
agaaatgttggctggaaagacaagacctcctaccgctggttcctgcagcacagaccccaa
gaaggctacatcagggttcggttctatgaaggtcagcaaatggtagcagacacaggaatt
atcattgacacaaccatgagaggaggcagactgggagttttctgcttctcccaggagaac
atcatctgggcgaacctgcgctacagatgcaatgatacaatccctgaggactttgagaca
ttcagaacccagcaaatccagcttttttaa
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