Labeo rohita (rohu): 127173085
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Entry
127173085 CDS
T09007
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127173085 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
127173085 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127173085 (lsm4)
03041 Spliceosome [BR:
lroh03041
]
127173085 (lsm4)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127173085 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
127173085 (lsm4)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127173085 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
127173085
NCBI-ProteinID:
XP_050978682
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All DBs
Position
11:8759306..8764399
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AA seq
143 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGGMQQNKPQGKGRGGGPGRGGGAGRGVFGG
RGRGMQGPGRGQQQDKKPGKPQV
NT seq
432 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttatctttactgaagacagcacagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaacggtcatctggtcagctgtgacaactggatgaacatcaacttg
agagaagttatttgcacctcacgggatggagataaattttggaggatgccggaatgctac
attagaggaagcaccattaaatacttacgaatccctgatgagatcatagatatggtgaaa
gaggaagtgctatcgaagggacgtggccggggaggcatgcagcagaacaaaccacaggga
aaaggcagaggaggcggacctggaagaggcggtggagccggcagaggtgtttttggtggc
cgtggcagaggcatgcaaggacctggccgtggacagcaacaagacaaaaagcctggaaaa
ccacaagtttga
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integrated database retrieval system
