Labeo rohita (rohu): 127173107
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Entry
127173107 CDS
T09007
Symbol
pdlim3a
Name
(RefSeq) PDZ and LIM domain protein 3a
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173107 (pdlim3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127173107 (pdlim3a)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
127173107 (pdlim3a)
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Arc_trans_TRASH
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
127173107
NCBI-ProteinID:
XP_050978757
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All DBs
Position
1:37525840..37534109
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AA seq
310 aa
AA seq
DB search
MPFTVVLDGPAPWGFRLIGGRDFSQPLTVAKISPGSKASRVNLSPGDIILAIDGVSAENM
MHSEAQSLIKDATYQLTLTVERPGTKLWSPIVTEHNKSHPFKANLEAERQEYSPIGTGHN
RKASPFVAAANIDDTRQVVSPTYNSPICLYSSGNIQDALHGQLKGLIHNKPGSPRKLNNI
EESDVYQMLLRNQDEDQPHEPRQSGSFKALQSYIDSEGTRPLVTRKVRAPMTKTSAPAGN
LHKLPMCDKCGNGIVGTVVKVQDKFRHPDCFVCTECEENLKQKGYYFIDDELYCEIHAHA
RAKPPESPDL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcactgttgtgctggatggacctgcaccgtggggctttcgacttattggagga
cgggacttcagccaacccctcaccgtcgccaaaatatcaccaggaagtaaagcttccaga
gtcaacctgtctcctggagacatcatcttagcgatagatggagtttctgcagaaaacatg
atgcactctgaggctcagagtctaatcaaagatgccacctatcagctcacacttactgtt
gagagaccagggactaagctgtggtcaccaattgttactgaacacaacaaaagccatcca
tttaaagctaacctagaggcagagagacaagagtacagtccaataggaacgggtcataat
cgaaaggcttcgccctttgtggccgcagccaacatagatgacacacgtcaggtggtgagc
ccaacctacaactctcctatttgcctttattcttcaggcaatatccaggatgccttacac
ggacaactcaagggcctcatccataacaaaccaggaagtcccaggaagcttaacaatata
gaggagtctgatgtatatcagatgctgctgagaaatcaagatgaggatcaaccccatgaa
ccgcgacagtcgggatcttttaaagccttacagagctacatcgacagtgagggtacacgt
ccgttagtgacaaggaaagtccgtgccccaatgaccaagacatctgctcctgcgggaaac
ttgcacaagctaccaatgtgtgataagtgtggtaacggcatagttgggacggttgtgaag
gttcaagataagtttcgtcatccagactgttttgtatgcaccgaatgtgaagaaaactta
aagcagaaaggatactacttcatagatgatgagttgtactgtgaaatccatgctcatgcc
cgggcaaaacctcctgagagtccagacctttga
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