Labeo rohita (rohu): 127173208
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Entry
127173208 CDS
T09007
Symbol
pcdh17
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-17
KO
K16499
protocadherin delta 2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127173208 (pcdh17)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127173208 (pcdh17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
127173208
NCBI-ProteinID:
XP_050978876
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All DBs
Position
11:20364188..20457332
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AA seq
1137 aa
AA seq
DB search
MHLSVFLFLLLWAQALTLKNLNYSIPEEKIQGVIGNIAKDAELELGEQGKKSNFRVLENS
APHLIDVDPESGLLYTKQRIDRETLCRQNPKCQLSMEVFANDKEICMIKVEIQDINDNAP
SFPSEQIDIDISENAAPGTRFPLAAAYDPDTKENGLKTYQITRDDYSIFSLDVKSRGDGT
KFPELVVQRSLDREERSHHTLIITATDGGEYPKSGTMQINVKVTDSNDNSPVFEQPSYVV
EIPENSPPGTVLIDLNATDPDEGINGQVTYSFSCYVSDRIKELFSIDPRTGVIKIQGKID
YEENPIIEIDVQAKDQGPNPIPGHCKVTVKVLDRNDNWPSIGFVAVRQGAVSEAATPGTV
IALVRVTDKDSGRNGQLQCRILGNVPFKLEENYDNFYTVVTDRPLDREVKDEYNITIVAK
DNGNPPLNSTKSFTVKILDENDNAPRFTKMVYLLQVPENNIPGEYLGSVLAHDPDLGQNG
TVSYSLLPSNVSEESITTYVNIKPTDGAIYALRSFNYEQTKYFDFKVQAKDSGNPHLESN
TTVRVSVLDVNDNIPVIVLPLLQNDTAEIHVPRNVGVGHIITTVRAVDNDFGESGRLTYE
ISDGNEEHLFEIDSVTGEVRTAQPLWEEVAPVVELIIKVTDHGKPSLSAMAKLIVKAYSG
PLPEGEPRINAEHHNWDMSLPLIVTLSIISIMLLAAMITIAVKCKRENKEIRTYNCRIAE
YTHPQLGKGKKKKINKNDIMLVQSEVEERDTMNVMNVVSSPSLATSPMYFDYQTRLPLSS
PRSEVMYLKPTANNLSVPQGHVGCHTSFTGPVTNTTETPVNRMSIIQTDNFPAEPNYMGN
RQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKMKATGLKPQ
PLEQEEDCVNCTEECRVLGHSDRCWMPQFPAGAGGAGTPQAEGSDYRTNLFVPAGMEAVA
VETETYETVCNPNGKKTFCTFGKERRDHTILVANVKPYLKTKRALSPLLQEVPSASCSPT
KGCSTGSPCSSAKGMGDGAEGKPSTSHYGPPDGQYISPNKQNKEQGYSALPPSDPVAKVL
AEARSRISQETAVEMDSVLEQGGGEMGRGTMDADQVVRDIDKLLQDCRGNENTPIRK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttctgttttccttttcctacttttatgggcgcaagccctgacgttgaaaaac
ttgaactactcaatacctgaggagaaaattcagggcgtcattggaaacattgccaaggat
gcagagcttgaactgggagagcaggggaaaaaatccaacttcagggtgttggagaactcc
gccccacaccttatcgatgtggatcccgaaagcgggctattgtacactaaacagcggatc
gacagggaaacactgtgcagacaaaaccccaagtgccagctctccatggaggtgtttgcc
aacgacaaggagatctgcatgattaaagttgagatacaggacataaatgacaacgcacca
agctttccctctgaacagatcgatattgacatatctgagaatgcagccccaggcacacgc
ttccccttggctgctgcctacgaccctgacaccaaggaaaatggcctgaaaacgtatcag
atcacacgggatgattatagtatattctctttggatgttaaatccagaggggacggaact
aagttccctgaattggtcgttcagaggtccttagatcgagaggaacgtagccatcacact
ttaattataactgccacagacggaggggaatatcccaaatcgggcacgatgcaaatcaac
gtgaaagtcactgattctaatgacaacagccctgtgtttgaacagccctcatacgtagtg
gagattcctgagaattcccccccaggcactgtactgatagatttaaatgctacagatccc
gatgaagggattaacggccaggttacttattcttttagctgttatgtctcagacaggatc
aaagagttgttctcaatagacccccgaacgggtgttataaagattcagggtaaaatcgac
tatgaggagaacccaattatagagattgatgttcaggcaaaggatcaaggccccaaccca
attcctggccattgtaaagtcaccgttaaagtgcttgacaggaatgacaactggccatca
ataggtttcgtagccgtgcgtcagggggcggttagcgaagcagcaactccagggacagtg
atcgcactcgtcagagtcacagacaaagactctggccgcaacggccagctccagtgtagg
attttgggcaatgttcccttcaagctggaggagaactatgataacttttacacagtagtg
actgacagacccctggacagggaggtaaaagatgagtataacatcactattgtagccaaa
gataacggcaacccgccactgaattcaacgaagtctttcacggttaagattttagatgaa
aacgacaatgcaccccgcttcactaaaatggtctaccttctccaggtgcctgaaaacaac
atcccaggggaatacctgggttctgttcttgctcatgacccagatttgggccaaaacggc
actgtatcctattcccttcttccttctaatgtaagcgaggaatctatcactacatatgtt
aacatcaaacccactgatggtgctatttatgccctgaggagtttcaactatgagcaaacc
aagtattttgactttaaggtgcaggcaaaggactcaggtaaccctcacctggagagcaac
accactgtccgtgtcagcgtactggatgttaatgataacattcccgtcattgtccttcca
ttacttcagaacgacactgctgagatccatgtgccgcggaatgtgggagtcggacacatt
atcaccaccgtgagagcggtggacaatgattttggtgagagcggtcgtctcacctacgag
atctcagatggcaatgaggaacacctgtttgagattgactcagtgactggcgaggtacgg
acagcccagccattgtgggaagaggtggcacctgttgtggaactgatcattaaggtgacc
gaccatggcaagccatcactgtccgccatggcgaaacttatcgtcaaagcctactccgga
cccctaccagaaggtgaaccacgcatcaacgcggaacaccataactgggacatgtcgctc
ccgctgatagtaaccctgagtatcatctcaataatgctcctagccgccatgatcaccata
gcagtcaagtgcaaacgggagaacaaggagatccgcacatacaactgccgcatcgcagag
tacactcacccgcagctcggcaagggcaagaagaagaagatcaacaagaatgacatcatg
ctggtgcagagcgaagtggaggagcgggacaccatgaacgtgatgaatgttgtcagcagt
ccctctttggcgacttcacccatgtacttcgactaccaaacccgtctgcccctcagctct
ccaaggtcagaggtcatgtacctcaaacccactgccaacaacctcagtgttcctcaaggg
cacgttggctgtcacaccagcttcacgggacctgttacgaacaccacagagacgccagtg
aacaggatgtcaataatacagacagacaattttcctgctgagcccaattacatgggtaac
aggcagcagtttgttcaaagcagctccacgttcaaagatccagagcgagccagtctcaga
gacagcgggcacggggacagcgaccaagcggacagcgatcaggacactaataaaggctcc
tgctgtgacatgtctgctaaggaagcgctcaagatgaaggccactggcctcaagcctcaa
ccacttgagcaggaggaggattgtgtgaattgcacggaggagtgtcgagtgctgggtcac
tcagaccgttgttggatgccccagtttcccgcaggggccggaggagcaggaactccccaa
gccgagggctcggactaccgcaccaacctcttcgtaccggctggcatggaagcggtcgca
gtggaaaccgaaacgtacgagacggtgtgcaaccccaacggcaaaaaaactttctgcaca
ttcgggaaagagcgtcgggaccacaccatcctcgtggcaaatgttaaaccctacctaaag
accaaacgtgccctcagccctctcttgcaggaggtcccatctgcctcatgtagccccacc
aaaggctgcagtacaggttccccgtgctcttcggccaaagggatgggcgacggagcggag
ggaaagcccagcaccagccactacggaccaccagatggacagtacatctccccgaacaag
cagaacaaagagcagggctactccgcgctgcctccctccgaccccgtagccaaagtcctg
gctgaagcacgttcgcggatcagccaggagacggcggtggaaatggacagcgttttggag
cagggcggaggcgagatgggccgtggcaccatggacgcagaccaggtggtcagagacatc
gacaaactcctgcaggattgtcggggaaacgaaaacaccccaatcagaaagtaa
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