Labeo rohita (rohu): 127173265
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Entry
127173265 CDS
T09007
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127173265 (rbm39a)
Spliceosome [BR:
lroh03041
]
Common components
Common spliceosomal components
General mRNP proteins
127173265 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
PRP38_assoc
RRM_5
RRM_occluded
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
127173265
NCBI-ProteinID:
XP_050978980
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Position
11:complement(26079486..26086354)
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AA seq
525 aa
AA seq
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MADDLDIEAMLEAPYKKDDNKSLSTNGHEERSKKKKKSKSRSRSRSRDRKRSRSRDRKKS
HDRRRSRSKERKRSRSRDRRRSRSRSRERGGRYRAPFSGLKFNGGPRGKTGPPPAIKLSR
RRSRSRSPFKKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDV
RIISDRNSRRSKGIAYIEFVDATSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNL
QKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFADAE
CAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMAR
LAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHC
FQLSNMFNPNSENDPGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPSIPAAM
AAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacattgaagcaatgctcgaggctccatataaaaaggatgacaac
aagtccttaagtaccaatggccacgaggagcggagcaagaagaaaaagaagagcaaaagt
cgcagcagaagccgcagccgggacaggaagagaagcaggagtcgtgatcgcaagaagagt
cacgaccgcaggagaagccgcagcaaagaacggaagcgcagccgcagcagggatagacga
cgcagccgttccaggagcagggagcgtggtggtcgctacagagctccattttctggcctg
aaatttaacggtggtcccagggggaagactggcccaccacctgccatcaaactaagccgt
agaaggtctagaagccgcagtcctttcaagaaagacaaaagccctataagacagcccatt
gataatctcacccccgaagaaagggatgcacgcacagtgttctgcatgcagctggcagcc
agaatccgaccacgagacttggaagaattcttttctgcagtgggaaaagtgcgagatgtg
agaatcatctctgatagaaactccagaagatccaaaggaattgcatacatcgagtttgtg
gatgccacctctgtacctttggcaatcggcttgtctggtcaaagacttcttggggtacca
atcattgtacaggcttcacaggctgaaaagaacagagcagctgcgttagccaacaactta
cagaagggcagttctggacctatgagactgtatgtcggctcattgcattttaacatcaca
gaagatatgctcagaggcatctttgaaccttttggaaggattgatagcattcaacttatg
atggacagtgaaacaggacgatcaaaaggatatggctttatcacatttgctgatgctgaa
tgtgctaagaaggctctggaacagcttaatggcttcgagttggctggcagaccaatgaaa
gtgggacatgtgacggagcgcactgatgcctccactgccagctcgtttttggacaatgat
gagctggaaaggaccggcattgatctggggactactggtagacttcaactcatggccaga
ctggctgaaggtactggtctgcagatcccacctgctgctcaacaggcccttcagatgagt
ggctccatggtagctatggctgcagctactgctgctatgaaccctgggttaagttttaac
atcaatgtgcccacaaaccaggctttgaatctaccatcacaaccaattgcaacgcattgt
ttccagctgtctaacatgttcaatccaaactcagaaaatgatcctggttgggaaattgaa
attcaggatgatgtcattgaagagtgcaacaaacacggaggagttatacacatatacgtg
gacaagaaatcagctgaaggtaatgtctatgtaaagtgtcccagcattcctgctgctatg
gctgccgtcagtgcattacacggacgttggtttggaggtaaaatgatcacagcagcttat
gtccctcttcctacataccacaacctttttccagagtcagtgcaggcaacacagcttctc
atgcccagtcgccggtga
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